PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550955g009
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 293aa    MW: 32894.6 Da    PI: 6.5075
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550955g009genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++l d++ ++G g+W+t+a++ g+ R +k+c++rw +yl
  PDK_30s6550955g009 15 KGLWSPEEDQRLRDYILKHGHGCWSTVAAKAGLQRNGKSCRLRWINYL 62
                        678*******************************************97 PP
2Myb_DNA-binding46.58.7e-1568113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg +++eE+e  +++++++G++ W++Ia +++ gRt++++k++ ++yl
  PDK_30s6550955g009  68 RGIFSAEEEEAVINLHAMWGNK-WSRIAMHLP-GRTDNEVKNYRNSYL 113
                         6789******************.*********.**********99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.831066IPR017930Myb domain
SuperFamilySSF466894.87E-2812108IPR009057Homeodomain-like
SMARTSM007171.0E-121464IPR001005SANT/Myb domain
PfamPF002492.4E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-221669IPR009057Homeodomain-like
CDDcd001671.85E-111862No hitNo description
PROSITE profilePS5129418.62167117IPR017930Myb domain
SMARTSM007172.0E-1367115IPR001005SANT/Myb domain
PfamPF002491.4E-1268113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2270118IPR009057Homeodomain-like
CDDcd001673.01E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGCGRCEKPK VNYRKGLWSP EEDQRLRDYI LKHGHGCWST VAAKAGLQRN GKSCRLRWIN  60
YLRPGLKRGI FSAEEEEAVI NLHAMWGNKW SRIAMHLPGR TDNEVKNYRN SYLKKKVVKF  120
EGSNSYASGT KSQESGNQSP KMSQIPEEVS KQILGSSFLE PLESSSVDSR PSAQCSIDHD  180
SCRGTLHPPL PKVLFADWLS MDHATSQSLP NTDGGMNCQW DFNLNADVFQ YGSSRVDDPS  240
SSDFLHGFGD TSIYGEFQLQ YEPGGQILGG AFYDDLPMDE TGRSFDTNQD VIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017696432.10.0transcription factor LAF1-like
SwissprotQ9M0K42e-53LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A2H3ZJ160.0A0A2H3ZJ16_PHODC; transcription factor LAF1-like
STRINGXP_008794566.11e-151(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.17e-56myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]