PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s6550952g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 536aa MW: 58619.2 Da PI: 6.4478 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.4 | 1.4e-06 | 295 | 316 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H PDK_30s6550952g001 295 FCVICGKGFKRDANLRMHMRGH 316 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.93E-5 | 292 | 319 | No hit | No description |
PROSITE profile | PS50157 | 11.614 | 294 | 321 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 294 | 316 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 295 | 345 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 296 | 316 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 91 | 343 | 376 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 381 | 403 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MDPKLRISSE ALAKSSCQMM GDPSRNFNLG QPFIQFNPTN LCYGGGPEQT FPEFTPTPDT 60 ETHGLYQPEP QVNSANQFKP SPNVDTAILD WDPRLILSNL SFLEQKIHQV QAIVQSIINQ 120 EGRLSNRANE MVAQQQLVTA DLTSIIIQLI STAGSLLPSI KNTLVSTNPS ASRLGSVIGA 180 TPSFGLNVSQ QQNAVVPMEV PKASACDKLI DNLNTNSCGK EGSELIKGLH GYGNEDVELI 240 KCVKSCDGEG TELAPLEDHD VKDSDDGVDG ENLPPGSYEL LQLEKEEILA PHTHFCVICG 300 KGFKRDANLR MHMRGHGDEY KTPAALAKPN KELTSEPALI KRYSCPFVGC KRNKEHKKFQ 360 PLKTILCVKN HFKRSHCDKS YTCSRCNTKK FSVIADLKTH EKHCGRDKWL CSCGTTFSRK 420 DKLFGHVALF QGHTPVLAVD DAKVSGTSDQ ARANEVMNGM VGTLEYNFAG SNLDDVQNLN 480 IKGVDSGRGC FSPMNFDACN FGGLDEFLRP ASEVSESPFS FLPFGSSNLI QGSGQN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008783403.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q943I6 | 0.0 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A2H3XGG3 | 0.0 | A0A2H3XGG3_PHODC; zinc finger protein STOP1 homolog | ||||
STRING | XP_008783403.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-161 | C2H2 family protein |
Publications ? help Back to Top | |||
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