PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550951g007
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 295aa    MW: 33087 Da    PI: 9.428
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550951g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-112471247
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                        g+WT+eE +++ da +++  +   +W+++a++++ g++  +++s++ ++
  PDK_30s6550951g007 24 GAWTQEENKRFEDALARFDRDtpdRWERVAAMIP-GKSVRDIISHYKDL 71
                        89*****************99*************.***********875 PP
2Myb_DNA-binding47.54.2e-15130174347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE++l++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky
  PDK_30s6550951g007 130 PWTEEEHKLFLLGLQKYGKGDWRNISRNFVTTRTPTQVASHAQKY 174
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.9072174IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.9E-42270IPR009057Homeodomain-like
SMARTSM007171.2E-92274IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-122479IPR009057Homeodomain-like
PfamPF002498.6E-102471IPR001005SANT/Myb domain
CDDcd001677.42E-82571No hitNo description
PROSITE profilePS5129417.909123179IPR017930Myb domain
SuperFamilySSF466896.28E-18125179IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-18126177IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-12127173IPR009057Homeodomain-like
SMARTSM007175.9E-13127177IPR001005SANT/Myb domain
CDDcd001673.36E-11130175No hitNo description
PfamPF002499.0E-13130174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEVLTPRAPY FPNSSWLPGP KRSGAWTQEE NKRFEDALAR FDRDTPDRWE RVAAMIPGKS  60
VRDIISHYKD LEDDVSHIEA GLIPFPGYSS SSFTLDWENS HGYERLKPSY CVGGKRSGGR  120
PDQERKKGVP WTEEEHKLFL LGLQKYGKGD WRNISRNFVT TRTPTQVASH AQKYFIRLNS  180
GGKDKRRSSI HDITTVNLLN NGPPSPSQAS MLAKRSSSAA TTGISDQFSV IVDSNQPNEA  240
AAVFSPSAHG NPFMHPPYEI TSYGMKLPAQ NSQRVILQDS MVADHSMLFQ MHPHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1626911176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785419.10.0transcription factor DIVARICATA isoform X1
RefseqXP_008785420.10.0transcription factor DIVARICATA isoform X1
SwissprotQ8S9H71e-104DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2H3XL350.0A0A2H3XL35_PHODC; transcription factor DIVARICATA isoform X1
STRINGXP_008785419.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-91MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]