PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550950g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family G2-like
Protein Properties Length: 467aa    MW: 52108 Da    PI: 5.4167
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550950g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.82.1e-32262316155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kprlrWt +LHerFveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl
  PDK_30s6550950g002 262 KPRLRWTLDLHERFVEAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 316
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.757259319IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-31260317IPR009057Homeodomain-like
SuperFamilySSF466897.35E-17261316IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-24262317IPR006447Myb domain, plants
PfamPF002499.8E-8264315IPR001005SANT/Myb domain
PfamPF143791.7E-20353399IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MQIFETPILD ILWKHAGFYG SIEIVFFSQF NCQELLDDKL SCASPSPHVQ RELINSSSPE  60
KGLPFCLKKL CPESEPGSSL SNESHTQHFE HAFSGSSTFC ASLYSSSSTS SESYRQLSNL  120
PFLPHPQKCK LENSVVQSLN SPLLHVGDTS NVHNEDEHSD DLMKDFLNLS GDASDSSFHG  180
ENYDNNSIAL GEQMELQMLS EQLGIAITDN GESPRLDDIY ETLAPSVPLS SNCNQTSQPL  240
TPPAKVQLHS KSSTSTTAAA NKPRLRWTLD LHERFVEAVN KLDGAEKATP KGVLKLMNVE  300
GLTIYHVKSH LQKYRLAKYL PEAQEDKKAS SSEDKKAPTI SHESDLGNKR STQVIEALRM  360
QIEVQKQLHE QLEVQRALQL RIEEHAGYLQ KILEEQQKAS NTFVFSMEMP DTEMQLESPH  420
HSSPHQAESK VDSICPPSSS NSKHKGTDSD TDSKPLEDHK RARLEVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-25262319259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-25262319259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-25262319259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-25262319259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-25262319259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-25262319259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-25262319259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-25262319259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q6YXZ4}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927131.10.0protein PHOSPHATE STARVATION RESPONSE 3 isoform X1
RefseqXP_010927132.10.0protein PHOSPHATE STARVATION RESPONSE 3 isoform X1
RefseqXP_010927133.10.0protein PHOSPHATE STARVATION RESPONSE 3 isoform X1
RefseqXP_019707510.10.0protein PHOSPHATE STARVATION RESPONSE 3 isoform X1
SwissprotA2X0Q01e-117PHR3_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLA0A3Q0I6170.0A0A3Q0I617_PHODC; protein PHOSPHATE STARVATION RESPONSE 3
STRINGXP_008796959.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-84G2-like family protein