PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550949g018
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 289aa    MW: 30675.1 Da    PI: 7.4054
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550949g018genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.8e-111155345
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        +W+ e ++ + +a   ++ +   +W++Ia+ ++ g+tl+++k+++ 
  PDK_30s6550949g018 11 SWSREQEKAFENALVTHPEDcsdRWEKIAADVP-GKTLEDIKHHYE 55
                        7********************************.**********96 PP

2Myb_DNA-binding38.13.6e-12118162347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  PDK_30s6550949g018 118 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVISRTPTQVASHAQKY 162
                         6*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.415762IPR017884SANT domain
SMARTSM007171.1E-7860IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-101066IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-41056IPR009057Homeodomain-like
CDDcd001671.13E-81158No hitNo description
PfamPF002491.4E-81155IPR001005SANT/Myb domain
PROSITE profilePS5129416.985110167IPR017930Myb domain
SuperFamilySSF466892.84E-16113168IPR009057Homeodomain-like
SMARTSM007176.6E-10115165IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.4E-17115165IPR006447Myb domain, plants
CDDcd001671.87E-9118163No hitNo description
PfamPF002491.2E-10118162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10118161IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MVMEEANSSS SWSREQEKAF ENALVTHPED CSDRWEKIAA DVPGKTLEDI KHHYELLVED  60
VNAIESGRVP VPCYPSSSDG GDQANEGSSG KKGGHSHGDS SHSGKASRSD QERRKGIAWT  120
EDEHRLFLLG LDKYGKGDWR SISRNFVISR TPTQVASHAQ KYFIRLNSMN KDRRRSSIHD  180
ITSVTNAEIS APQGPITGQI NGGATTSGKS AKQSSQPSGG PPGVGVYGTT IGQPVGPLVS  240
AVGTPVNMPV PAAPHMAYGV GAPVAGAVVP GAPMNMAPVT YPMPPTSHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1712771176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802864.10.0transcription factor SRM1
RefseqXP_008802869.10.0transcription factor SRM1
RefseqXP_008802876.10.0transcription factor SRM1
RefseqXP_008802884.10.0transcription factor SRM1
RefseqXP_008802892.10.0transcription factor SRM1
RefseqXP_008802900.10.0transcription factor SRM1
RefseqXP_008802908.10.0transcription factor SRM1
RefseqXP_008802917.10.0transcription factor SRM1
SwissprotQ9FNN61e-121SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2H3YRR90.0A0A2H3YRR9_PHODC; transcription factor SRM1
STRINGXP_008802864.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-100MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]