PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509498g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 730aa    MW: 79622.3 Da    PI: 8.5736
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509498g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53e-10169193226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C +++ t tCk+G++CkF H+
  PDK_30s65509498g002 169 GEKDCAHYMLTRTCKFGNSCKFDHP 193
                          7889********************8 PP
2zf-CCCH29.21.5e-09220246127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C+++++t  Ck+G rCkF+H++
  PDK_30s65509498g002 220 PGEPDCSYYMKTQKCKFGYRCKFHHPK 246
                          5789*********************96 PP
3zf-CCCH27.74.8e-09260279827
                          GGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                          f+a tG Ck+G++CkF+H++
  PDK_30s65509498g002 260 FYAMTGKCKFGPNCKFHHPK 279
                          8*****************96 PP
4zf-CCCH37.34.4e-12335358326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++ C+f+++tG CkyG++C+++H+
  PDK_30s65509498g002 335 EADCPFYLKTGSCKYGATCRYNHP 358
                          789********************9 PP
5zf-CCCH32.71.2e-10426445726
                          SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   7 rffartGtCkyGdrCkFaHg 26 
                          +++++tG Ck+G+rCkF+H+
  PDK_30s65509498g002 426 QYYMKTGLCKFGERCKFHHP 445
                          59*****************8 PP
6zf-CCCH361.2e-11477500427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          ++C f+++tGtCk+G++CkF H+p
  PDK_30s65509498g002 477 VICFFYMKTGTCKFGAKCKFDHPP 500
                          6899******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.962167195IPR000571Zinc finger, CCCH-type
SMARTSM003560.0068167194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-5168194IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-8169193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.31219247IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4219246IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-7221246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5224249IPR000571Zinc finger, CCCH-type
SMARTSM003560.63252279IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-6260279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4260282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.737260280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802332360IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6332359IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9335358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5336359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4338357IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.887407447IPR000571Zinc finger, CCCH-type
SMARTSM003560.27423446IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-8426445IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4427446IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.089473501IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-8473500IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9477500IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6477500IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5478498IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1460.201.1E-17604719No hitNo description
SuperFamilySSF696452.9E-18612711No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MSKEIYNYSS SYGVGGGASS SYSLRATNRY LSDGGSSRLS SVDPFAAAVT DMYSDGLSSL  60
YAKSGDGSLR LPGSGIAGYG AAGSLSAAGK IGGGIGRDAV SPALFASSAL DPMVVGGAKR  120
SVEAFYNQSI LRSHNTIGQS DALFSSNSLV KHSRPETASN LPIYPQRPGE KDCAHYMLTR  180
TCKFGNSCKF DHPIWVPEGG IPDWKEIPFV PTSESLPERP GEPDCSYYMK TQKCKFGYRC  240
KFHHPKDKLH ASAGEVGGEF YAMTGKCKFG PNCKFHHPKD LKIPSHGEDT DNTGQMELEK  300
DDGAAGGDPK LAKAHIPITP ALLHNSKGLP IRLGEADCPF YLKTGSCKYG ATCRYNHPDR  360
NSFNPPLASS LGQAIMPSPA TNLPFGVCLY PFLLMQLGVI PTIYPQRPGE IECDRFYNCC  420
VQLRMQYYMK TGLCKFGERC KFHHPIDRLA PISDAKQAPQ QNFKLTLSGL PRREGAVICF  480
FYMKTGTCKF GAKCKFDHPP PGELMNTINL LFLASIPACL SISQQCCEPV STSGGHSRSL  540
LIMMFPALHE EKKAKDTDQA GVLPWMTNIT SQNAVQHRRR PSLAIRTSVI SIGYLNNLLV  600
MTRSTSRFLL QILQGRVQSP EKGVDLDCHS VEFGDVRYHI QVSMKKPQVM VLSASLPIPP  660
PEATFHSGLP VGAIEAIKAA YGPIVQILDP PKDGYNLTMK LYLSKLPSNE GSASFLSKVI  720
MSFCYEWVET
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913403.10.0zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ941Q31e-156C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2H3Y0M10.0A0A2H3Y0M1_PHODC; zinc finger CCCH domain-containing protein 8-like
STRINGXP_008798450.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-158floral homeotic protein (HUA1)