PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509404g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 308aa    MW: 34778.2 Da    PI: 9.0148
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509404g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT  Ed+ll d++  +G+g+W++ ++  g++R++k+c++rw++yl
  PDK_30s65509404g004 14 RGAWTSHEDKLLSDYIMVHGPGRWRSLPANAGLNRCGKSCRLRWLNYL 61
                         89********************************************97 PP
2Myb_DNA-binding506.8e-1667137148
                          TSSS-HHHHHHHHHHHHHTTTT........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg........................tWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ T+eE+el+++++k+lG+                         +W++Ia +++ gRt++++k++w++yl
  PDK_30s65509404g004  67 RGNITKEEEELIIRLHKLLGNScfprthtnlsmlehgdvdetiqifRWSLIAGRLP-GRTDNEIKNYWNTYL 137
                          7999*****************9**********************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.489965IPR017930Myb domain
SMARTSM007176.6E-121363IPR001005SANT/Myb domain
PfamPF002494.7E-141461IPR001005SANT/Myb domain
SuperFamilySSF466892.49E-211465IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-221568IPR009057Homeodomain-like
CDDcd001671.02E-81661No hitNo description
SMARTSM007174.6E-1466139IPR001005SANT/Myb domain
PROSITE profilePS5129413.44166141IPR017930Myb domain
PfamPF002492.6E-1367137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2369141IPR009057Homeodomain-like
CDDcd001671.83E-971137No hitNo description
SuperFamilySSF466892.49E-21109138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MATKGCCREE GLNRGAWTSH EDKLLSDYIM VHGPGRWRSL PANAGLNRCG KSCRLRWLNY  60
LRPDIKRGNI TKEEEELIIR LHKLLGNSCF PRTHTNLSML EHGDVDETIQ IFRWSLIAGR  120
LPGRTDNEIK NYWNTYLRKK VSGSSSQQQF SSRTRKTPFQ KSKSGKKESS SEVHVIRTKA  180
VRCTKTLLAA QVPEHAKNNS PDAFRPSATF KHGYLSDSIG NNVAPPPLKQ YECGSRTMEI  240
MQNSLFSQAA KGHFYISDNS LHDSGSVASA NKDIHIEGIY SSEIEEGDGL HPFFDNDIWD  300
SLLMPPEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231214125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0N7B8W21e-99A0A0N7B8W2_MUSPR; R2R3 MYB transcription factor TT2-1
STRINGGSMUA_Achr3P27700_0011e-100(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.16e-58MYB family protein