PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509337g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Trihelix
Protein Properties Length: 305aa    MW: 35490.8 Da    PI: 10.5359
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509337g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.42.4e-201021652486
             trihelix  24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                          +++kk++W++vs++m+e+gf +sp+qC++k+++lnkryk++++  +k+ +++++++ +++d l+
  PDK_30s65509337g006 102 ARRKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDLLGKGtACRVVENQALLDTLD 165
                          4699********************************************5599999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-16101156No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MLPSSMSSAG LLGLEMPLHQ HQHQHPHHQQ QQFLHPHHHH QQQQQQQHIF PFQPPHSGID  60
ADHPMRHASS SYSPYGARGK QQPTLSSEDE QQPGPGDEGD GARRKKGKWK SVSRAMMEKG  120
FYVSPQQCED KFNDLNKRYK RVNDLLGKGT ACRVVENQAL LDTLDQLSPK AKEEARKLLN  180
SKHLFFREIS SGSWRSRRRS RTARDWWGTQ ARQKGQRGHW LKRRVAELEE QRVGYDSRAL  240
QLERQRFKWL RFSTNKEREM ERMKLENDSL RLENERMLLL LRQKELELLG SGGGGGGADN  300
HLQQQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018462976.12e-60PREDICTED: trihelix transcription factor GT-3a-like
TrEMBLA0A151TVB91e-71A0A151TVB9_CAJCA; Uncharacterized protein
STRINGPOPTR_0016s11010.11e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-42sequence-specific DNA binding transcription factors