PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s65509273g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YB | ||||||||
Protein Properties | Length: 154aa MW: 17234.5 Da PI: 4.388 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 72.8 | 5.5e-23 | 11 | 93 | 3 | 85 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d lP a + +i+k++lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al lGf dy+e + + PDK_30s65509273g002 11 KDDVSLPKATMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREEKRTIAPEHVLKALEVLGFGDYIEDVYA 93 67889*************************************************************************98754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.8E-37 | 8 | 139 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.18E-34 | 12 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-20 | 15 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MDPMDIVGKS KDDVSLPKAT MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE 60 VCSREEKRTI APEHVLKALE VLGFGDYIED VYAAYEQHKL DTLDSPKVGK FGGSEMTEEE 120 AMAAQQRMFA EARARMNNGV SVQRQSDSDR SLDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 5e-35 | 12 | 133 | 12 | 133 | Transcription Regulator NC2 beta chain |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008807401.1 | 1e-111 | protein Dr1 homolog | ||||
Swissprot | P49592 | 1e-80 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A2H3Z2G3 | 1e-109 | A0A2H3Z2G3_PHODC; protein Dr1 homolog | ||||
STRING | XP_008807401.1 | 1e-110 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5720 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-66 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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