PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509273g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NF-YB
Protein Properties Length: 154aa    MW: 17234.5 Da    PI: 4.388
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509273g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB72.85.5e-231193385
                NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                         ++d  lP a + +i+k++lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al  lGf dy+e + +
  PDK_30s65509273g002 11 KDDVSLPKATMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREEKRTIAPEHVLKALEVLGFGDYIEDVYA 93
                         67889*************************************************************************98754 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-378139IPR009072Histone-fold
SuperFamilySSF471131.18E-3412141IPR009072Histone-fold
PfamPF008081.4E-201579IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDPMDIVGKS KDDVSLPKAT MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE  60
VCSREEKRTI APEHVLKALE VLGFGDYIED VYAAYEQHKL DTLDSPKVGK FGGSEMTEEE  120
AMAAQQRMFA EARARMNNGV SVQRQSDSDR SLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B5e-351213312133Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807401.11e-111protein Dr1 homolog
SwissprotP495921e-80NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A2H3Z2G31e-109A0A2H3Z2G3_PHODC; protein Dr1 homolog
STRINGXP_008807401.11e-110(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.42e-66nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]