PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550926g037
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 453aa    MW: 49340.9 Da    PI: 5.0069
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550926g037genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.83.1e-14356405555
                 AP2   5 GVrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          Vr++k +g+W A+I  +   g  r  k ++lg+f+t+eeAa+a++ a+ +l+g
  PDK_30s6550926g037 356 YVRRRK-DGKWQARIGRV---GdSRdaKDIYLGTFDTEEEAAEAYDIAAIELRG 405
                         599888.9*******997...443347*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.353199334IPR001471AP2/ERF domain
SMARTSM003801.8E-7199340IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-8199221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-8296335IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-6303335IPR016177DNA-binding domain
PROSITE profilePS5103217.517352413IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-15357415IPR016177DNA-binding domain
SMARTSM003807.4E-22357419IPR001471AP2/ERF domain
CDDcd000184.78E-20357415No hitNo description
Gene3DG3DSA:3.30.730.107.8E-17357413IPR001471AP2/ERF domain
PfamPF008473.2E-8357405IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSEEKRSPDP LEDAEPSENP ASLRPSLDDS GERSESTAAG EKVAAEPSEA AGHQEDAACQ  60
VDSVVNAAVE EKSDPLEATA AEKAESLEEA AAGKERVRSE VPSRNGEDHD EKKADSSNAT  120
DVSGLVVAMG VPVLDKSSSR SGEELNATST DVEKAESIEV TNGDISVAAV AGPGKNPDKK  180
VGTLLAAAMK KYAAPRSSSY HGVTRLKWSG KFEAHLWDNT SQVEGRKRKG KHVTMNLCLS  240
IKVRRLGIGP RIGAALAQCQ YGMVPVSNCM VRCAPYCLVR AGTANHAFNE HIFFQKATLS  300
KEGSYDSEEK AARAHDLAAL KYWGPNPNTK LNFPVSDYEK ELETMKTMSQ EEYVAYVRRR  360
KDGKWQARIG RVGDSRDAKD IYLGTFDTEE EAAEAYDIAA IELRGVHAVT NFDISNYCPR  420
FCVVVRMECN GKITECSKRE TDLNIFKDDF DAT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807712.11e-160AP2-like ethylene-responsive transcription factor BBM1
RefseqXP_008807713.11e-160AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A2H3Z3611e-159A0A2H3Z361_PHODC; AP2-like ethylene-responsive transcription factor BBM1
STRINGXP_008807712.11e-160(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.35e-37AINTEGUMENTA-like 6