PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550926g024
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 284aa    MW: 32413.2 Da    PI: 6.2452
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550926g024genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.9e-1884137356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+++++ eq+++Le+ Fe+ +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  PDK_30s6550926g024  84 KKRRLNLEQVRTLERNFEMGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 137
                         4557899**********************************************9 PP
2HD-ZIP_I/II1292e-4183173191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl+ eqv++LE++Fe+ +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+aLkr+++ +k+en++L++++e+L++e+
  PDK_30s6550926g024  83 EKKRRLNLEQVRTLERNFEMGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKRQFEGIKAENDALQAQNEKLHAEI 173
                         69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-1975141IPR009057Homeodomain-like
PROSITE profilePS5007116.90879139IPR001356Homeobox domain
SMARTSM003894.6E-1782143IPR001356Homeobox domain
PfamPF000465.0E-1584137IPR001356Homeobox domain
CDDcd000861.20E-1584140No hitNo description
Gene3DG3DSA:1.10.10.601.0E-1886147IPR009057Homeodomain-like
PRINTSPR000311.1E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5119135IPR000047Helix-turn-helix motif
PfamPF021833.7E-15139179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MFHNQVTCNG LPSSFFPPNF LLPHEEGHQP PASLGPLLPT NPQDFRGVAT MLGKRSMSFS  60
GIEACEEMNA EDDLSDDCSH VGEKKRRLNL EQVRTLERNF EMGNKLEPER KMQLARALGL  120
QPRQIAIWFQ NRRARWKTKQ LEKDYDALKR QFEGIKAEND ALQAQNEKLH AEILALKGRE  180
TTEPINLNKE TEGSCSNRSE NSSDVNLDIS RTQATDSPSN PHQSRPFFPS YRSPSVAQLL  240
HGSSKAEAQC PKIEHGIQEE NFNMFCSIED QTAFWSWSEQ HNFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804470.10.0homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC031e-95ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2H3YW010.0A0A2H3YW01_PHODC; homeobox-leucine zipper protein ATHB-13-like
STRINGXP_008804470.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-92HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]