PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s6550926g013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YB | ||||||||
Protein Properties | Length: 215aa MW: 23204.8 Da PI: 7.0594 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 182.4 | 3.8e-57 | 36 | 131 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +eqdrflPianvsrimk+ lPanakisk+aketvqecvsefisf+t+easdkcq+ekrktingddllwa++tlGfe+y+eplkvyl++yre PDK_30s6550926g013 36 KEQDRFLPIANVSRIMKRSLPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFENYIEPLKVYLNRYRE 126 79***************************************************************************************** PP NF-YB 93 legek 97 +egek PDK_30s6550926g013 127 TEGEK 131 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-55 | 33 | 148 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.02E-41 | 38 | 148 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-27 | 41 | 105 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 9.1E-21 | 69 | 87 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 72 | 88 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 9.1E-21 | 88 | 106 | No hit | No description |
PRINTS | PR00615 | 9.1E-21 | 107 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MKGRRNHRLS PVGSPPSDTE SGGAVAAGHG LDSSLKEQDR FLPIANVSRI MKRSLPANAK 60 ISKEAKETVQ ECVSEFISFI TGEASDKCQK EKRKTINGDD LLWAMTTLGF ENYIEPLKVY 120 LNRYRETEGE KNSMARQGDQ SPNEEGSHNP SSYHGASGVS PMANRNTVTS NASLMGFPGG 180 FYSAGPSAAP QGFGGGGGRM MGFGEHYKVS DFDME |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-49 | 35 | 126 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-49 | 35 | 126 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008804488.1 | 1e-160 | nuclear transcription factor Y subunit B-1-like | ||||
Swissprot | O23310 | 1e-65 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A2H3YVG8 | 1e-159 | A0A2H3YVG8_PHODC; nuclear transcription factor Y subunit B-1-like | ||||
STRING | XP_008804488.1 | 1e-160 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 4e-68 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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