PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s6550916g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 912aa MW: 104373 Da PI: 6.7383

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s6550916g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.9	3.9e-24	107	190	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 YneYAk++GF vrk+ ++sk+n+e++ +++vC+kegk++ ++k+ + +++ rtgC+a lkvk++ +++w+v ++ +eHnHel PDK_30s6550916g003 107 LYNEYAKHMGFGVRKKLCRRSKTNNEMIAAWYVCTKEGKSAANEKA----ECSQSARRTGCRAALKVKRMANKEWKVVHFAKEHNHEL 190 7**************************************99888....889999*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-20	107	190	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.3E-30	303	396	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.311	594	630	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-7	604	629	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-7	605	632	IPR006564	Zinc finger, PMZ-type
PRINTS	PR00600	1.1E-6	766	793	IPR000009	Protein phosphatase 2A regulatory subunit PR55
PRINTS	PR00600	1.1E-6	794	821	IPR000009	Protein phosphatase 2A regulatory subunit PR55

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0000159	Cellular Component	protein phosphatase type 2A complex
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0008601	Molecular Function	protein phosphatase type 2A regulator activity

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence Send to blast
MESTNDGSSQ KQANVEDIEL AAEIGLVDDD DDSDDDDDHD DDDDDEEEEE EEEAASLIRG 60 SAAIELADPS TDLEVSSLAG NPDEVGGTRS EPSIGMVFQS AVAAYRLYNE YAKHMGFGVR 120 KKLCRRSKTN NEMIAAWYVC TKEGKSAANE KAECSQSARR TGCRAALKVK RMANKEWKVV 180 HFAKEHNHEL DLENVCLFRS HMKNRISNRS RINMAGVGHK YAMAAPGKQS GGQDGECQNH 240 MDRGQRRFFA PADAHAIHML FIHMHSKNPA FFYAVEFDGE QHLKNVLWAD AKAKVAYTHF 300 GYVVTFDTTY LTDGYKVPFA PFVGVNHHGQ SILLGCALVA DQSTASFVWL FKRWLDAMSG 360 RPPKAIISDY NKDIAAAISQ VFPETRHRYC LWQILKRVPE KLGDVCEARE NFLKKLNKCI 420 YDSTTADEFE RRWWKLIHRF GLVNEEWLQS LYKDRQQWVP LYLKDTFFAG MSISQRNESV 480 STIFHKFITR ETGLKELLDK YEVALESKFE DEAQEDFWSF HSKTKERAHP SPFELQLADV 540 YTRNMFEKFQ MEVLGISSVF ASKSEENGDI ATYVVKAYEV QEKRKTRRLL EKEYKVVWNT 600 MERKVCCACR LFEFKGYLCR HALAVFLALG VLEVPSFYIL KRWTKDAKSR HVLDEGYTVH 660 GDCSESVAQR FNDICVRSFK FAEEASVTKR SYDVALLSLR EAFRRVTHAN NSVRKSCQRN 720 YPHNGVSNIA NEPSAKFQPR AENGTSKQNN NVSRSYEQLG HNLVMFREVP KGLRHLLISQ 780 TFISAENLRV NLWNLEISNQ YFNIDDMRPL DMEDLVVVRD AKGRGAVAVS HMLIVLQGTH 840 VKTMDDRVAG LQMSKHSHIA CAWSMKLQTL LLHKYFVGQA WRLGDELQDV QQVYKNLMAE 900 LEAVDEVKVE NS

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence Send to blast

MESTNDGSSQ KQANVEDIEL AAEIGLVDDD DDSDDDDDHD DDDDDEEEEE EEEAASLIRG  60
SAAIELADPS TDLEVSSLAG NPDEVGGTRS EPSIGMVFQS AVAAYRLYNE YAKHMGFGVR  120
KKLCRRSKTN NEMIAAWYVC TKEGKSAANE KAECSQSARR TGCRAALKVK RMANKEWKVV  180
HFAKEHNHEL DLENVCLFRS HMKNRISNRS RINMAGVGHK YAMAAPGKQS GGQDGECQNH  240
MDRGQRRFFA PADAHAIHML FIHMHSKNPA FFYAVEFDGE QHLKNVLWAD AKAKVAYTHF  300
GYVVTFDTTY LTDGYKVPFA PFVGVNHHGQ SILLGCALVA DQSTASFVWL FKRWLDAMSG  360
RPPKAIISDY NKDIAAAISQ VFPETRHRYC LWQILKRVPE KLGDVCEARE NFLKKLNKCI  420
YDSTTADEFE RRWWKLIHRF GLVNEEWLQS LYKDRQQWVP LYLKDTFFAG MSISQRNESV  480
STIFHKFITR ETGLKELLDK YEVALESKFE DEAQEDFWSF HSKTKERAHP SPFELQLADV  540
YTRNMFEKFQ MEVLGISSVF ASKSEENGDI ATYVVKAYEV QEKRKTRRLL EKEYKVVWNT  600
MERKVCCACR LFEFKGYLCR HALAVFLALG VLEVPSFYIL KRWTKDAKSR HVLDEGYTVH  660
GDCSESVAQR FNDICVRSFK FAEEASVTKR SYDVALLSLR EAFRRVTHAN NSVRKSCQRN  720
YPHNGVSNIA NEPSAKFQPR AENGTSKQNN NVSRSYEQLG HNLVMFREVP KGLRHLLISQ  780
TFISAENLRV NLWNLEISNQ YFNIDDMRPL DMEDLVVVRD AKGRGAVAVS HMLIVLQGTH  840
VKTMDDRVAG LQMSKHSHIA CAWSMKLQTL LLHKYFVGQA WRLGDELQDV QQVYKNLMAE  900
LEAVDEVKVE NS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	581	588	EKRKTRRL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026662207.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
TrEMBL	A0A3Q0IA20	0.0	A0A3Q0IA20_PHODC; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
STRING	XP_008796002.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-166	FAR1 family protein