PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509157g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 274aa    MW: 30081.5 Da    PI: 8.312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509157g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.9e-096381955
                         HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         +f+ Lrel+P+     ++K +Ka+ L +++eYI+ Lq
  PDK_30s65509157g005  6 RFQILRELIPHT----DQKRDKASFLLEVIEYIRFLQ 38
                         79*********8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.76137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-7242No hitNo description
SuperFamilySSF474591.23E-10358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-6638IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-12657IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDLSCRFQIL RELIPHTDQK RDKASFLLEV IEYIRFLQEK VQKDESSYLG WNQDNAKLMP  60
WVKVYCRQFW KNARNNNQST GDGISDPSEV NKNGSASPGC MFSGNGNSIP AAPAMLSTAQ  120
NLTESDTAAR ISYKAMETPS NIANNMTTQA QPQWLRSSGP ADSAVSREIL NEQEELTIDE  180
GTISVSSTYS QGLLTTLAQA LQSSGIDLSQ ASISVQINLG KRAINKRLAA TLTNSNAKDH  240
EDPASTNQAK GHCRVGSKGE EPSQAPKRRK RNNS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026665905.10.0transcription factor BIM2-like isoform X2
TrEMBLA0A3Q0IK810.0A0A3Q0IK81_PHODC; transcription factor BIM2-like isoform X2
STRINGXP_008809668.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-44BES1-interacting Myc-like protein 2