PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509148g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 247aa    MW: 28548.2 Da    PI: 7.5023
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509148g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-171057148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+ Ed++lv+ v +lG ++W+ Ia+  g++Rt+k+c++rw +yl
  PDK_30s65509148g003 10 KGPWTEKEDLQLVCFVGLLGERRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                         79********************************************97 PP
2Myb_DNA-binding53.17.3e-1763108148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rgr+T +E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++
  PDK_30s65509148g003  63 RGRMTHQEERLILELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.595557IPR017930Myb domain
SMARTSM007173.6E-15959IPR001005SANT/Myb domain
SuperFamilySSF466891.13E-289104IPR009057Homeodomain-like
PfamPF002497.5E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-191164IPR009057Homeodomain-like
CDDcd001675.42E-101257No hitNo description
PROSITE profilePS5129426.15258112IPR017930Myb domain
SMARTSM007171.2E-1562110IPR001005SANT/Myb domain
PfamPF002496.9E-1563107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2365111IPR009057Homeodomain-like
CDDcd001672.67E-1065108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVTVKEETRK GPWTEKEDLQ LVCFVGLLGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGRMTHQE ERLILELHSR WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQERKRNAL  120
SPSSSSSSLT YNSPSRSEPP AEEAGLEQHE LNSASGCCCV TTGFVVEEEG AKGWYSMDQI  180
WNEIATSEAV SGLSFEGCKN EVCDTSWPPM PSPMWEYSPE SLWKIDEEEF KMFPSVHDLL  240
VPNYHHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2771121105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-271011258159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-271011258159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-27101124105C-Myb DNA-Binding Domain
1msf_C2e-27101124105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788078.10.0myb-related protein MYBAS2 isoform X1
SwissprotQ4JL764e-87MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A2H3XSU60.0A0A2H3XSU6_PHODC; myb-related protein MYBAS2 isoform X1
STRINGXP_008788078.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.36e-82myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]