PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s65509147g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 32609 Da PI: 6.3615 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++lv ++k +G g W++ +++ g++R++k+c++rw++yl PDK_30s65509147g001 14 KGAWTALEDKILVSYIKTHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.1e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ PDK_30s65509147g001 67 RGNISEDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 7899******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.782 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.89E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.07E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.388 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MGRRPCCSKE GLNKGAWTAL EDKILVSYIK THGEGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SEDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKRVHGQP 120 SLDSKPRSTA KSKGENLTTG PPVARLPPPT DPPVIRTKAM RCTRTFCAPD QLTSSPPNTD 180 QHLDLVQREM STLLVVPQHE SLDDPGMGSI DSDKARPLDL DLLQDIGEGI QVGDNGTSEE 240 DSSTCLGMCL NDSVPFDGTM PEIWLANECY QPDVTLDLQS LSSLLDSEDF WF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008797452.1 | 0.0 | transcription factor TT2-like isoform X1 | ||||
TrEMBL | A0A2H3YE58 | 0.0 | A0A2H3YE58_PHODC; transcription factor TT2-like isoform X1 | ||||
STRING | XP_008797452.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 4e-63 | MYB family protein |