PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s654821g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family FAR1
Protein Properties Length: 672aa    MW: 77057.2 Da    PI: 7.4045
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s654821g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.31.1e-2735120188
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        +fYn+YA +vGFsvrks+s ks++n  + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++++k +++g+++vt++  +HnH+
  PDK_30s654821g002  35 EFYNRYAGHVGFSVRKSSSDKSSENI-TRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMTIKITSTGRYHVTEFIPDHNHQ 120
                        6*********************6666.999*************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2435120IPR004330FAR1 DNA binding domain
PfamPF105514.9E-30244338IPR018289MULE transposase domain
PROSITE profilePS509669.916512559IPR007527Zinc finger, SWIM-type
PfamPF044349.8E-5512556IPR007527Zinc finger, SWIM-type
SMARTSM005754.2E-4534561IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MRKVIDSVAA LDDAAIAKLV PEIDMEFESE EKAYEFYNRY AGHVGFSVRK SSSDKSSENI  60
TRSRTFVCSR EGFRKDKKGA KEVKRPRPET RIGCPARMTI KITSTGRYHV TEFIPDHNHQ  120
PAPPSTTHML RSQRITTELQ AVEADMSDDS GTTPRSTSEP VGKQVGGPRY VSFLPADYKN  180
HLRSKRMKAM QMGDAGAVLK YLQSMQLDNP SFFYAIQVDE DDKLTNILWA DSKSIMDFNN  240
FGDVLCLDTT YKIYGYGRPL APFLGVNHHK QTVIFGAALI YDESIESFKW LFDTFKIAMR  300
GKQPKTILTD QSMAISSAVA AAWPGTSHRL CVWHVYQNAV KHLNHVFQGS KTFGKDFGRC  360
VYEYEEEEEF LLAWRAMLDK YDLRNNEWLG KLFEERDIWA LPYGRQIFCA DMKSTLQNES  420
LSSVLKKYLS PQLDLLSFFK HYERVVDEHR YAELQADFHA SQSFPRIPPS KMLRQAANIY  480
TPVVFEIFRR EFEMFMDCML YSCGEVDTTS EYRVAVTEKP KEHFVRFDSS DCSAICTCKK  540
FEFMGIQCCH VLKVLDFRNI KELPQKYYLK RWRKDAKSGN EGDNRAVAND GDRRSPTSSS  600
LNVPVSSYAQ QQGFHGMSQF NQDSPVSDLQ PNSFHGSTQL AQVFLAPGYH NFNEELGYRR  660
CSDVNYIASD DC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18387KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782870.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_008782880.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A2H3XF410.0A0A2H3XF41_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_008782870.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-134FAR1-related sequence 5