PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s654821g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GATA | ||||||||
Protein Properties | Length: 115aa MW: 12745.7 Da PI: 7.9674 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 41.9 | 1.4e-13 | 46 | 79 | 1 | 32 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 C Cg + Tp++Rrgp+g++tLCnaCG+ + k PDK_30s654821g001 46 CLRCGISAkaTPHMRRGPEGPRTLCNACGIAWTK 79 5567766667**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.0E-5 | 40 | 92 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.76E-10 | 41 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.2E-11 | 44 | 79 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 5.0E-11 | 47 | 79 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MHMPEPVHDV RGGGSGGDYQ MQYEQEPELE VQPSNGDDGL EGPLRCLRCG ISAKATPHMR 60 RGPEGPRTLC NACGIAWTKL PMYLRSYRLS VITITKLRKF KDLIGIHVDQ ISGLP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008782870.1 | 1e-50 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_008782880.1 | 1e-50 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_008782887.1 | 1e-50 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A2H3XF41 | 3e-49 | A0A2H3XF41_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A2H3XF65 | 2e-49 | A0A2H3XF65_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
STRING | XP_008782870.1 | 5e-50 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15039 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.3 | 1e-13 | GATA-type zinc finger protein with TIFY domain |