PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1211711g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | YABBY | ||||||||
Protein Properties | Length: 176aa MW: 19438.8 Da PI: 6.6708 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 26.3 | 2.4e-08 | 16 | 44 | 5 | 31 |
YABBY 5 ssseqvCyvqCnfCntila..vsvPstsl 31 seq+Cyv+CnfC+t+la ++ P sl PDK_30s1211711g001 16 PPSEQLCYVHCNFCDTVLAdeITCPPPSL 44 469***************93344566555 PP | |||||||
2 | YABBY | 137.9 | 1.2e-42 | 54 | 138 | 85 | 170 |
YABBY 85 nvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 n ++ +++++++++ + ++ee+p++p v+rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl PDK_30s1211711g001 54 NSSNGNHNHNHNAMAP-VKGTEEELPQTPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 138 4444455555555544.5678899************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.9E-6 | 17 | 39 | IPR006780 | YABBY protein |
Pfam | PF04690 | 5.2E-40 | 55 | 138 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.46E-8 | 82 | 131 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-4 | 87 | 130 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MSSSSAAFSL DHLSSPPSEQ LCYVHCNFCD TVLADEITCP PPSLLMDQPI LHNNSSNGNH 60 NHNHNAMAPV KGTEEELPQT PVVNRPPEKR QRVPSAYNRF IKDEIQRIKA GNPDITHREA 120 FSAAAKNWAH FPHIHFGLMP DQGLKKSSVR QQEGEDVLLK DGFYAAAAAN MGVTPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787013.1 | 1e-106 | protein YABBY 4-like | ||||
Swissprot | O22152 | 5e-53 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A2H3XPU0 | 1e-105 | A0A2H3XPU0_PHODC; protein YABBY 4-like | ||||
STRING | XP_008787013.1 | 1e-106 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-55 | YABBY family protein |