PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1207141g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 398aa    MW: 44164.4 Da    PI: 6.1644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1207141g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.9e-11221263754
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++E++RR+ri ++++ L++l+P +     +K + a+i   A++YI++L
  PDK_30s1207141g005 221 KNEKQRRERITKKYDDLKSLIPDS-----TKQDRASIIADATDYINEL 263
                         58********************99.....9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.722214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-11220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8221263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-11222280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-10223268No hitNo description
Gene3DG3DSA:4.10.280.103.2E-10223276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MHHQSEYFGP HEAMSIQGGA GAFGGLSQSN TISHSDLALM GGSSSSSSGN RNNLEEKLRL  60
FRFLHEDPNV HHPHSAMGLD LHFQPGLDPR ADIATTNLMQ ANNNQPYFDP TTPSNPWVIG  120
MLNPGNFHYT ADMFFGELPP DSTSTGSTIL HDPMVHLDFP SQPSLVKDVL NSLPHDTGFF  180
PGSNGVGELE DGYAGQLGRQ QSDKKRKKGV SRQVEEAGSL KNEKQRRERI TKKYDDLKSL  240
IPDSTKQDRA SIIADATDYI NELLRTVKEL KILVAEKRHR REWGKKLIVG DGVDGDVESS  300
SIKPFIDDGD RAFRGSLRSS WIQRKSRETF VDVRIIEDEV LDELQLELLH LSGGNIGDSH  360
IFIFNTKIHE GSSVYASAIA KKLIEVLDVP YPPLPVSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203207KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793418.10.0transcription factor EAT1-like
TrEMBLA0A2H3Y4T20.0A0A2H3Y4T2_PHODC; transcription factor EAT1-like
STRINGXP_008793418.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.24e-36bHLH family protein