PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1204301g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 405aa MW: 45959.8 Da PI: 4.4437

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1204301g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.2	1e-13	145	229	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +L++a ++ + +r++l+ W +v+kk+++ +rs qC+++++ l+k+ykk+k ++ +++s+ss +++yf++++ PDK_30s1204301g001 145 WSEDSTFVLLDAWGDRYVQNGRKSLRSDEWCDVAKKVAQfSRTTRSDAQCRNRLDTLKKKYKKEKVRMAEQASPSS-KWVYFKKMD 229 ***********************************6626779*********************9876665.9*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.5E-21	144	231	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MDATQDDARY LPNLPSPSIC RRPFSSSSSS SSSSPLGSKI SAARKSSFHP PIGRSYADED 60 DEDDRNDTDE AVDEHDDDED ENDGGDRHRK IRGEEEEEEE EAESRGKRRK LDKFALGFEF 120 APRVPRPAIV TLEGKFPAKS SPTDWSEDST FVLLDAWGDR YVQNGRKSLR SDEWCDVAKK 180 VAQFSRTTRS DAQCRNRLDT LKKKYKKEKV RMAEQASPSS KWVYFKKMDE LISSPSPPAA 240 GARQQQPPRL SYGVDAGEYV FASSSIYPNR SNGNDETRDS PGGTGSEEDV DEEDDDDESD 300 GLRPRREKVS MGSSDSSFRM LADSIQKFGE IYEKMESRKR QQMVELERMR KELQRDLEMH 360 KRKVLERAQA EIAKIREEEG EEEEEESEND EDGDEVDVSA DNLSG

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MDATQDDARY LPNLPSPSIC RRPFSSSSSS SSSSPLGSKI SAARKSSFHP PIGRSYADED  60
DEDDRNDTDE AVDEHDDDED ENDGGDRHRK IRGEEEEEEE EAESRGKRRK LDKFALGFEF  120
APRVPRPAIV TLEGKFPAKS SPTDWSEDST FVLLDAWGDR YVQNGRKSLR SDEWCDVAKK  180
VAQFSRTTRS DAQCRNRLDT LKKKYKKEKV RMAEQASPSS KWVYFKKMDE LISSPSPPAA  240
GARQQQPPRL SYGVDAGEYV FASSSIYPNR SNGNDETRDS PGGTGSEEDV DEEDDDDESD  300
GLRPRREKVS MGSSDSSFRM LADSIQKFGE IYEKMESRKR QQMVELERMR KELQRDLEMH  360
KRKVLERAQA EIAKIREEEG EEEEEESEND EDGDEVDVSA DNLSG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010911328.1	1e-165	trihelix transcription factor ASIL1
Refseq	XP_019709215.1	1e-165	trihelix transcription factor ASIL1
TrEMBL	A0A2H3Z6F4	1e-157	A0A2H3Z6F4_PHODC; trihelix transcription factor ASIL2
STRING	XP_008808856.1	1e-158	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8090	22	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-56	Trihelix family protein