PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1203911g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

WRKY

Protein Properties

Length: 370aa MW: 40891.2 Da PI: 7.4442

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1203911g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.8	7e-31	167	226	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a Cpv+k+v+r+aed +++++tYeg+Hnh+ PDK_30s1203911g001 167 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApACPVRKQVQRCAEDMSILITTYEGTHNHP 226 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-32	152	228	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-27	160	228	IPR003657	WRKY domain
PROSITE profile	PS50811	28.552	162	228	IPR003657	WRKY domain
SMART	SM00774	6.0E-37	167	227	IPR003657	WRKY domain
Pfam	PF03106	5.3E-27	168	226	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MGEVREENEK LKTTLARIVK DYQSLQMQFF DIIQQEQEKK PTETPPVPIE VEEPELVSLS 60 LGTSSSGHKK EEKVKTNKSK ENEQIEGSLA LGLDCKFKGS STGTKEPGSN LSLEDSFEEP 120 KEEEPGEPWP PSKVLKHLRN GDEEVSQQPH VKKARVSVRA RCDAPTMNDG CQWRKYGQKV 180 AKGNPCPRAY YRCTVAPACP VRKQVQRCAE DMSILITTYE GTHNHPLPIS ATAMASTTSA 240 AACMLLSGSS ASRPTIGSLA TPSAVMTTSN ANLHGLNFSL SGNSRPGHCH HVVCWSPSWW 300 KGHSRPWSDM GRTTQFSSPL FKYSNREWLC IRLLDSVDGF KFEPTTREPD VPPAFLGSSH 360 LQECLCLSSG

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MGEVREENEK LKTTLARIVK DYQSLQMQFF DIIQQEQEKK PTETPPVPIE VEEPELVSLS  60
LGTSSSGHKK EEKVKTNKSK ENEQIEGSLA LGLDCKFKGS STGTKEPGSN LSLEDSFEEP  120
KEEEPGEPWP PSKVLKHLRN GDEEVSQQPH VKKARVSVRA RCDAPTMNDG CQWRKYGQKV  180
AKGNPCPRAY YRCTVAPACP VRKQVQRCAE DMSILITTYE GTHNHPLPIS ATAMASTTSA  240
AACMLLSGSS ASRPTIGSLA TPSAVMTTSN ANLHGLNFSL SGNSRPGHCH HVVCWSPSWW  300
KGHSRPWSDM GRTTQFSSPL FKYSNREWLC IRLLDSVDGF KFEPTTREPD VPPAFLGSSH  360
LQECLCLSSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-22	154	228	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026658453.1	0.0	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	7e-99	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A3Q0HUU4	0.0	A0A3Q0HUU4_PHODC; probable WRKY transcription factor 72
STRING	XP_008787504.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5047	38	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-51	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]