PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1203181g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GATA | ||||||||
Protein Properties | Length: 157aa MW: 17578.1 Da PI: 10.4547 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 24.8 | 3e-08 | 71 | 87 | 19 | 35 |
GATA 19 nktLCnaCGlyyrkkgl 35 +++LCnaCG++yrk+++ PDK_30s1203181g001 71 SRSLCNACGIRYRKRRK 87 578***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 1.9E-4 | 72 | 87 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MISPASAKPS LRNWGSRFDH LYRDTTIDGY DRMEAFKRYA RRRRRGEEHK KNSAAAVAVA 60 VEAAMGSLDP SRSLCNACGI RYRKRRKAKI NGEDKHRKTT ATNSTAIGTI KGKNGSMMAS 120 LEALMDDGDI VRTYLATGVC GYWEFWLAMA AKENFGF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787687.1 | 1e-66 | GATA transcription factor 16-like | ||||
TrEMBL | A0A2H3XRG1 | 3e-65 | A0A2H3XRG1_PHODC; GATA transcription factor 16-like | ||||
STRING | XP_008787687.1 | 5e-66 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP24968 | 3 | 5 |