PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1202321g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family FAR1
Protein Properties Length: 229aa    MW: 25982.7 Da    PI: 6.7176
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1202321g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.41.6e-2556145189
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         ++Y +YA++vGF vr++ks +s++++++++r+fvC++eg+++++    + +++r+r +tr gC a+++v +e++gkw+vtkl++eH+H +
  PDK_30s1202321g002  56 EYYVAYANHVGFGVRMNKSCHSRKDDTVIMRRFVCTREGFHSKRAIYdDGEKKRKRGTTREGCMAMIEVIREDHGKWVVTKLVTEHTHMV 145
                         69***************************************99987657889999*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2356145IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDLNDNSADP HMSLALDALA VELNNPITSQ LLQLDNSDMV EPIIGMEFDS DEAAKEYYVA  60
YANHVGFGVR MNKSCHSRKD DTVIMRRFVC TREGFHSKRA IYDDGEKKRK RGTTREGCMA  120
MIEVIREDHG KWVVTKLVTE HTHMVALPGK VRPRDDKAII LGNVGLLHGE SSRGFNNLKN  180
FNRGIRVDPF GEGGEAQGLL EYLKRMQSEN PAFFYTMFVY VFMLIQICS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785345.11e-161protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2H3XKW71e-159A0A2H3XKW7_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008785345.11e-160(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-28FAR1-related sequence 5