PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1202321g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | FAR1 | ||||||||
Protein Properties | Length: 229aa MW: 25982.7 Da PI: 6.7176 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.4 | 1.6e-25 | 56 | 145 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y +YA++vGF vr++ks +s++++++++r+fvC++eg+++++ + +++r+r +tr gC a+++v +e++gkw+vtkl++eH+H + PDK_30s1202321g002 56 EYYVAYANHVGFGVRMNKSCHSRKDDTVIMRRFVCTREGFHSKRAIYdDGEKKRKRGTTREGCMAMIEVIREDHGKWVVTKLVTEHTHMV 145 69***************************************99987657889999*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-23 | 56 | 145 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MDLNDNSADP HMSLALDALA VELNNPITSQ LLQLDNSDMV EPIIGMEFDS DEAAKEYYVA 60 YANHVGFGVR MNKSCHSRKD DTVIMRRFVC TREGFHSKRA IYDDGEKKRK RGTTREGCMA 120 MIEVIREDHG KWVVTKLVTE HTHMVALPGK VRPRDDKAII LGNVGLLHGE SSRGFNNLKN 180 FNRGIRVDPF GEGGEAQGLL EYLKRMQSEN PAFFYTMFVY VFMLIQICS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008785345.1 | 1e-161 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2H3XKW7 | 1e-159 | A0A2H3XKW7_PHODC; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_008785345.1 | 1e-160 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-28 | FAR1-related sequence 5 |