PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1202001g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 414aa MW: 47252.8 Da PI: 4.8838

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1202001g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.7	1.8e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv +yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd PDK_30s1202001g002 6 LPPGFRFHPTDEELVAYYLKRKINGRRIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATQAGYWKATGKD 95 79**************************.99**********95334455777***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl PDK_30s1202001g002 96 RKVSS-QRRAVGTKKTLVYYRGRAPHGSRTDWVMHEYRL 133 9.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.11E-65	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.673	6	156	IPR003441	NAC domain
Pfam	PF02365	6.3E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RRIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATQAGYWK ATGKDRKVSS QRRAVGTKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDEKECET TSGLQDAYAL CRIFKKSAPG PKIIEHYGAP YEEHSEWISN 180 DCSPTVDLSS DGRGEDLESC AYPFPRGTCS SDMIHGASFN ASASIDSKWM QFLNEETFTS 240 SSPYYQLPSF SYVPSKQVDV APDRGRLQHR LSLPPLEVED FPQLDLADSK ILHSERLQEN 300 TNEVDILQEI LSVASASQEL VNNSGYPDIW AGSNSHFDEF SCLLEYEIDR KTEGMHFSQM 360 DGMGSSRSMT RSCEVEEPTK LIEICDLEKE FINGKGNENL KGVKLLNNDE LIEV

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING RRIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATQAGYWK ATGKDRKVSS QRRAVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDEKECET TSGLQDAYAL CRIFKKSAPG PKIIEHYGAP YEEHSEWISN  180
DCSPTVDLSS DGRGEDLESC AYPFPRGTCS SDMIHGASFN ASASIDSKWM QFLNEETFTS  240
SSPYYQLPSF SYVPSKQVDV APDRGRLQHR LSLPPLEVED FPQLDLADSK ILHSERLQEN  300
TNEVDILQEI LSVASASQEL VNNSGYPDIW AGSNSHFDEF SCLLEYEIDR KTEGMHFSQM  360
DGMGSSRSMT RSCEVEEPTK LIEICDLEKE FINGKGNENL KGVKLLNNDE LIEV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-57	1	162	15	174	NAC domain-containing protein 19
3swm_B	1e-57	1	162	15	174	NAC domain-containing protein 19
3swm_C	1e-57	1	162	15	174	NAC domain-containing protein 19
3swm_D	1e-57	1	162	15	174	NAC domain-containing protein 19
3swp_A	1e-57	1	162	15	174	NAC domain-containing protein 19
3swp_B	1e-57	1	162	15	174	NAC domain-containing protein 19
3swp_C	1e-57	1	162	15	174	NAC domain-containing protein 19
3swp_D	1e-57	1	162	15	174	NAC domain-containing protein 19
4dul_A	1e-57	1	162	12	171	NAC domain-containing protein 19
4dul_B	1e-57	1	162	12	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008778272.1	0.0	NAC domain-containing protein 86-like
Swissprot	Q9FFI5	1e-100	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A2H3X4N5	0.0	A0A2H3X4N5_PHODC; NAC domain-containing protein 86-like
STRING	XP_008778272.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-124	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]