PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1201231g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 707aa    MW: 76916 Da    PI: 6.9669
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1201231g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.7e-23125226199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF  
  PDK_30s1201231g001 125 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL- 212
                         89****************************996555555..8999*********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          +++++ l+v+++r+
  PDK_30s1201231g001 213 -RTENGDLCVGIRRA 226
                         .4588999****997 PP

2Auxin_resp117.89e-39296379183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++Fev+Y+Prast+eF+vk++ v+ a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  PDK_30s1201231g001 296 AANLAANGKPFEVIYYPRASTPEFCVKAAAVRVAMRIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 379
                         7899******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-37117229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-28121231IPR015300DNA-binding pseudobarrel domain
CDDcd100174.41E-21124225No hitNo description
PfamPF023626.8E-22125226IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084125227IPR003340B3 DNA binding domain
SMARTSM010192.3E-21125227IPR003340B3 DNA binding domain
PfamPF065078.0E-34296379IPR010525Auxin response factor
PROSITE profilePS5174518.38621701IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MITFSSEPVK ESMKDTDKCL DSQLWHACAG GMVQMPAVNS KVYYFPQGHA EHAQGIVDFG  60
SSPRVPALLL CRVTAVKFMA DPETDEVFAK IRMIPVRSDE PDYGDDDGMG LGGNGADVQE  120
KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTVLAKDV HGEVWKFRHI  180
YRGTPRRHLL TTGWSTFVNQ KKLVAGDSIV FLRTENGDLC VGIRRAKRGV GGGHESPSGW  240
NPPTGNCFSA YGGLSVFLRE EENKLMRSNG SGGILNSGGT IMRGRGRVRA ESVIEAANLA  300
ANGKPFEVIY YPRASTPEFC VKAAAVRVAM RIQWCPGMRF KMAFETEDSS RISWFMGTIS  360
SVQVADPIRW PNSPWRLLQV TWDEPDLLQN VKHVSPWLVE LVSNMPAIHL TPFSPPRKKL  420
RVPQHSDFPI DGQFPTPVFP GNPLGPGSSP LCFFPDSTPA GIQGARHAQF GISLSDLHLN  480
KLQSGLFHAG LQRLDQATPP SRISTGLLIG NPAIHDNVSC LLTVGNPSQS TKKLCNGKTP  540
QLVLFGQPIL TEQQISLSNS GDIISPGVTG NSSSDGNPEK TTNMSDGSGS SVHQNGLAEN  600
SSCEGFPWYR DRRASELGLE TGHCKVFMES EDVGRTLDLS VLGSYEELYG RLADMFGIDK  660
SEMMSHVLYR DAAGAVKQTG GEPFSEFTKT ARRLTILTDS GSDNIGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-812040051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791554.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2H3Y0C20.0A0A2H3Y0C2_PHODC; Auxin response factor
STRINGXP_008791554.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]