PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s1201231g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 707aa MW: 76916 Da PI: 6.9669 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.1 | 1.7e-23 | 125 | 226 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF PDK_30s1201231g001 125 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL- 212 89****************************996555555..8999*********************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 +++++ l+v+++r+ PDK_30s1201231g001 213 -RTENGDLCVGIRRA 226 .4588999****997 PP | |||||||
2 | Auxin_resp | 117.8 | 9e-39 | 296 | 379 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev+Y+Prast+eF+vk++ v+ a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ PDK_30s1201231g001 296 AANLAANGKPFEVIYYPRASTPEFCVKAAAVRVAMRIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 379 7899******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-37 | 117 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-28 | 121 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.41E-21 | 124 | 225 | No hit | No description |
Pfam | PF02362 | 6.8E-22 | 125 | 226 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.084 | 125 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-21 | 125 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.0E-34 | 296 | 379 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.38 | 621 | 701 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 707 aa Download sequence Send to blast |
MITFSSEPVK ESMKDTDKCL DSQLWHACAG GMVQMPAVNS KVYYFPQGHA EHAQGIVDFG 60 SSPRVPALLL CRVTAVKFMA DPETDEVFAK IRMIPVRSDE PDYGDDDGMG LGGNGADVQE 120 KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTVLAKDV HGEVWKFRHI 180 YRGTPRRHLL TTGWSTFVNQ KKLVAGDSIV FLRTENGDLC VGIRRAKRGV GGGHESPSGW 240 NPPTGNCFSA YGGLSVFLRE EENKLMRSNG SGGILNSGGT IMRGRGRVRA ESVIEAANLA 300 ANGKPFEVIY YPRASTPEFC VKAAAVRVAM RIQWCPGMRF KMAFETEDSS RISWFMGTIS 360 SVQVADPIRW PNSPWRLLQV TWDEPDLLQN VKHVSPWLVE LVSNMPAIHL TPFSPPRKKL 420 RVPQHSDFPI DGQFPTPVFP GNPLGPGSSP LCFFPDSTPA GIQGARHAQF GISLSDLHLN 480 KLQSGLFHAG LQRLDQATPP SRISTGLLIG NPAIHDNVSC LLTVGNPSQS TKKLCNGKTP 540 QLVLFGQPIL TEQQISLSNS GDIISPGVTG NSSSDGNPEK TTNMSDGSGS SVHQNGLAEN 600 SSCEGFPWYR DRRASELGLE TGHCKVFMES EDVGRTLDLS VLGSYEELYG RLADMFGIDK 660 SEMMSHVLYR DAAGAVKQTG GEPFSEFTKT ARRLTILTDS GSDNIGR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 7e-81 | 20 | 400 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008791554.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2H3Y0C2 | 0.0 | A0A2H3Y0C2_PHODC; Auxin response factor | ||||
STRING | XP_008791554.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
---|---|---|---|
|