PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1198591g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 305aa    MW: 34567.4 Da    PI: 7.6857
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1198591g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-51111411128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                         lppGfrFhP+deelv++yL+kk +g+     +    ++ +vd++k+ePwdLp+ +  + kewyfFs rd+kyatg+r+nrat+sgyWkatg
  PDK_30s1198591g001  11 LPPGFRFHPRDEELVCDYLAKKDSGDGgngsFYGCPMMIDVDLNKCEPWDLPELACVGGKEWYFFSLRDRKYATGERTNRATQSGYWKATG 101
                         79********************999886655222346999************7666689******************************** PP

                 NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         kd+++ + +g lvg++ktLvfy+grap+g+ktdWvmhe+r+
  PDK_30s1198591g001 102 KDRQISR-HGVLVGMRKTLVFYQGRAPRGRKTDWVMHEFRM 141
                         *****99.9******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-594164IPR003441NAC domain
PROSITE profilePS5100555.5711166IPR003441NAC domain
PfamPF023651.5E-2612141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSILSMIEAR LPPGFRFHPR DEELVCDYLA KKDSGDGGNG SFYGCPMMID VDLNKCEPWD  60
LPELACVGGK EWYFFSLRDR KYATGERTNR ATQSGYWKAT GKDRQISRHG VLVGMRKTLV  120
FYQGRAPRGR KTDWVMHEFR MEGHSNPPKF SFANKEDWVL CRVFLFCKSR GVTTKPITET  180
CCHDSSSSAL PPLMDTYVTF DQAPLSLERY EQVPCFSNHP LNLAFHHPNA IVPTIPLVER  240
SLPTKISAHM GSLPDMSSCD KKDIRAVDIP KLEDNPKREV HPNLAQGSLE GYLTENGLSN  300
IWNTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-49816412166Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778535.10.0NAC domain-containing protein 21/22-like
SwissprotQ84TE62e-96NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2H3X5B90.0A0A2H3X5B9_PHODC; NAC domain-containing protein 21/22-like
STRINGXP_008778535.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.29e-99NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]