PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1197911g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 365aa MW: 40734 Da PI: 4.9203 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.1 | 5.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+ Ed +l d+++++ ++W++I++ g+ R++k+c++rw +yl PDK_30s1197911g001 14 KRPWTPAEDMKLTDYIQKHRLENWHAIPKLAGLLRCGKSCRLRWINYL 61 579*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1.1e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ ++++ +++G++ W++Ia++++ gRt++++k+ w+++l PDK_30s1197911g001 67 RGNFTQEEEATIIKLQELMGNK-WSKIASCLP-GRTDNEIKNVWNTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.529 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.07E-9 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 16 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.094 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.43E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MGRGPCCEKV GLKKRPWTPA EDMKLTDYIQ KHRLENWHAI PKLAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TQEEEATIIK LQELMGNKWS KIASCLPGRT DNEIKNVWNT HLKKRLAPKE 120 SSPSSNKTKD PNPSSPSKSS ISYVNDDNIK NLEKNNSLKV ESSRDLANLM TEIFMEPDQC 180 NMRIEGHEPS VDDCRESSSI SSLESHITSY EGKNNQDCLI QVPEIPIDSE IWSMVDDDSC 240 FLTPEVGPVV EDGAHNNATS SIVDSKGEGE TKGWLGCLEE EIDLWGTMDA NAVKQLGPWG 300 CHGGVVEEFD PVSLLSSKET LPTFCHESCA SALFNTDVIV VPIIADPIGY PTRSDPNVTN 360 FMRPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 12 | 116 | 5 | 108 | B-MYB |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787349.1 | 0.0 | transcription factor MYB13-like | ||||
TrEMBL | A0A2H3XQQ7 | 0.0 | A0A2H3XQQ7_PHODC; transcription factor MYB13-like | ||||
STRING | XP_008787349.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 3e-59 | myb domain protein 63 |