PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1193741g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

CAMTA

Protein Properties

Length: 500aa MW: 56821.1 Da PI: 5.349

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1193741g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	90.5	1.5e-28	49	121	3	74
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLK 74 ke ++rwlk+ e++ iL+n+e+++l+++++++p+sgsl+L+nr+++r+fr+DG+ w+kk +g+t E+he+LK PDK_30s1193741g005 49 KEaQTRWLKPVEVLFILHNYESFQLSNKPPDKPPSGSLFLFNRRVLRNFRNDGHLWRKKNNGRTLAEAHERLK 121 6669********************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	39.775	44	171	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.1E-28	47	140	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.2E-24	50	121	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MQPGKIEASI KLKLEGLSFM LVDVSSQFWS LFGPSGANCS SFDMNKLCKE AQTRWLKPVE 60 VLFILHNYES FQLSNKPPDK PPSGSLFLFN RRVLRNFRND GHLWRKKNNG RTLAEAHERL 120 KRRIYWMLDP CLKLHLDDLP MKFMKNLHIH NGDVVSRSLL YLLVSDIVRK NFKLLIQANV 180 IIAFFQVSFE RHMGTLFLSI IEKWQRIAIS DLNNGRYVPE PIFSFSTESP STFNQSNSIT 240 DAQAQGFPTQ INELNEQCQS SCSPVSVEEV NSEFVTGKNE KPHLIKMDRS ETYNQPLLPE 300 VNHALRKLEE QLSLDDDDDG GVGGYIYSEE DFSQETLDSL FDQLKHEANG HVEEGERQDG 360 SSTLQMVKSP EFSGWSHGSH SMLNSTSKLN SCEAASGLLT LGNDNNIHGL EMMLLTENSI 420 YSSSAFSGMG LDQSQCETPL GTGSRLPISQ KPWFSICEIS PEWAFSFERT KQPWLEEQEV 480 ICNSDHHVLR SKDLVEVVEN

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MQPGKIEASI KLKLEGLSFM LVDVSSQFWS LFGPSGANCS SFDMNKLCKE AQTRWLKPVE  60
VLFILHNYES FQLSNKPPDK PPSGSLFLFN RRVLRNFRND GHLWRKKNNG RTLAEAHERL  120
KRRIYWMLDP CLKLHLDDLP MKFMKNLHIH NGDVVSRSLL YLLVSDIVRK NFKLLIQANV  180
IIAFFQVSFE RHMGTLFLSI IEKWQRIAIS DLNNGRYVPE PIFSFSTESP STFNQSNSIT  240
DAQAQGFPTQ INELNEQCQS SCSPVSVEEV NSEFVTGKNE KPHLIKMDRS ETYNQPLLPE  300
VNHALRKLEE QLSLDDDDDG GVGGYIYSEE DFSQETLDSL FDQLKHEANG HVEEGERQDG  360
SSTLQMVKSP EFSGWSHGSH SMLNSTSKLN SCEAASGLLT LGNDNNIHGL EMMLLTENSI  420
YSSSAFSGMG LDQSQCETPL GTGSRLPISQ KPWFSICEIS PEWAFSFERT KQPWLEEQEV  480
ICNSDHHVLR SKDLVEVVEN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008806417.1	0.0	calmodulin-binding transcription activator 4-like isoform X1
Refseq	XP_017701206.1	0.0	calmodulin-binding transcription activator 4-like isoform X4
TrEMBL	A0A2H3Z045	0.0	A0A2H3Z045_PHODC; calmodulin-binding transcription activator 4-like isoform X1
TrEMBL	A0A2H3ZYH7	0.0	A0A2H3ZYH7_PHODC; calmodulin-binding transcription activator 4-like isoform X4
STRING	XP_008806417.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9407	34	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-22	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains