PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1191211g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family FAR1
Protein Properties Length: 658aa    MW: 75802.8 Da    PI: 7.6195
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1191211g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.61.4e-2047140190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY+++Ak++GFs+r+++++ +    + it+r+f+C + g ++e++ +++k +r+r+++r+gC+a +++ k+      +w+vt +++ HnH
  PDK_30s1191211g001  47 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGLPQEKQLDDSKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWCVTGFSNVHNH 137
                         6***************999887455667********************9*******************98887676789************ PP

                FAR1  88 ela 90 
                         e+ 
  PDK_30s1191211g001 138 EFL 140
                         985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-1747140IPR004330FAR1 DNA binding domain
PfamPF105512.1E-20263354IPR018289MULE transposase domain
PROSITE profilePS509669.371539575IPR007527Zinc finger, SWIM-type
PfamPF044344.1E-7546572IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-4550577IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MDHTDLSPEV VDSIDELPEG TVLTKQTSVN LVPFIGQRFV SQDAAYEFYC SFAKQCGFSI  60
RRHRTRGKDG VGRGITRRDF TCHRGGLPQE KQLDDSKLQR NRKSSRCGCQ AYMRIVKRAD  120
FDVPEWCVTG FSNVHNHEFL KSNQVHHFPA YCTISADDKS RICMFSKAGI SVRQMLRLTE  180
LEKGVKLGCL QFTEIDVRNL LQSFKNLDRD HDAIDLLTMC KKIKDEDPNF KYEFKIDGCN  240
RLEHISWSYA SSVQLYEAFG DAVVFDTTHR LDAYDMLLGV WIGVDNHGMN CFFGCVLLRD  300
ENIQSFSWAL KSFLGFTRGK APQTILTDQN MWLKEATSVE MPNTKHAFCI WRIIAKFSDW  360
FSVLLGSRYD NWKAEFHRLY NMQVVEEFEV EWRKMVNAYA LHTNKHIASL YALRTFWALP  420
YLRCYFFAGI TSAVYSESIS AFTQQFLSAQ SQPDNFVEQV AAILDFKDQI GPKQKSQRKL  480
HKIRLKTGSP IESHAATVLT PYAFCKLQEE LVLAPQYASF PLEDGSFLVR HHTQMDGGCK  540
VIWAPQEELI SCSCHHFEFT GILCRHILRI LSTNNCFHIP DDYLPIRWRC INSPLTKCSR  600
TAPREHAERV HLLQAMVSAL MAESVESEER LEVASEQVAM VLSRIREFPL STHEVRKL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795528.10.0protein FAR1-RELATED SEQUENCE 11-like isoform X1
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2H3Y9M30.0A0A2H3Y9M3_PHODC; protein FAR1-RELATED SEQUENCE 11-like isoform X1
STRINGXP_008795528.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151711516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]