PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1190171g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NF-YB

Protein Properties

Length: 273aa MW: 29693.7 Da PI: 10.1861

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1190171g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	151.2	1.9e-47	83	178	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 req++++P +nv+rim++vlP +akis+dak t+ ecvse+isf+t+ea+++cqre+rkti+++d++wa+++lGfedyv pl+ yl++yre PDK_30s1190171g001 83 REQEHYMPTTNVIRIMRRVLPMHAKISDDAKMTTLECVSEYISFITGEANERCQREQRKTITAEDVIWAMGKLGFEDYVGPLRRYLQRYRE 173 89*************************************************************************************** PP NF-YB 93 legek 97 eg++ PDK_30s1190171g001 174 SEGDQ 178 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.2E-43	77	179	IPR009072	Histone-fold
SuperFamily	SSF47113	4.53E-33	85	179	IPR009072	Histone-fold
Pfam	PF00808	1.1E-20	89	152	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.6E-14	116	134	No hit	No description
PROSITE pattern	PS00685	0	119	135	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	7.6E-14	135	153	No hit	No description
PRINTS	PR00615	7.6E-14	154	172	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MAGGGDGIPV FSRLPRISSV IPPHKPTKRS IKTRGGQAIR RRDQREPGGS RRSQGSAAGT 60 PVPPGGTAST ATAPAAQPQV NLREQEHYMP TTNVIRIMRR VLPMHAKISD DAKMTTLECV 120 SEYISFITGE ANERCQREQR KTITAEDVIW AMGKLGFEDY VGPLRRYLQR YRESEGDQRI 180 GLRGEHSPIF KQRRHPQIAA SPSVRSQPPL MCSSMLPPPP SSSLIMPPTA PPPFINHLSG 240 EGSGSGYFFG MYGGGDGAGT SNSEAPPTPD FYP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-49	79	173	3	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008798408.1	1e-134	nuclear transcription factor Y subunit B-10-like
TrEMBL	A0A2H3YGD7	1e-133	A0A2H3YGD7_PHODC; nuclear transcription factor Y subunit B-10-like
STRING	XP_008798408.1	1e-134	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	3e-50	nuclear factor Y, subunit B6