PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1189271g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

CAMTA

Protein Properties

Length: 630aa MW: 71047.2 Da PI: 6.6141

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1189271g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	87.1	1.8e-27	192	265	3	75
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKv 75 ke ++rwlk+ e++ iL+n+e+++lt++++ +p+sgsl+L+nr+++r+fr+DG w+kk +g+t E he+LKv PDK_30s1189271g001 192 KEaHTRWLKPIEVLFILQNHESFQLTHKPPVEPPSGSLFLFNRRVLRNFRNDGLLWRKKNNGRTLAESHERLKV 265 56699********************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	45.044	187	350	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.0E-30	190	345	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.2E-23	193	265	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MGHALFQYIW ARATWRLVGI WGRRDLFLQA LRRCSESSLL CQEAARVTCT SYQIWLARNA 60 RTFGKHGMSP RLVVESARMQ VAKLSLIIPV EGTLTAQDIW NFHSALAASH TDPSARVVAT 120 GGSQFFDISI LSAELRAIVT LGLQFDTVPP IRARAAASIS ELFLWTDRDA ARGLGSVHKI 180 EARGFDINKL RKEAHTRWLK PIEVLFILQN HESFQLTHKP PVEPPSGSLF LFNRRVLRNF 240 RNDGLLWRKK NNGRTLAESH ERLKVWLGIL KYWLVTMLVG SKIHVFRGAS IGCWTHGRHA 300 HNVEPGKDTC PIWAYVKIYF NIHCFFCFNE RAHEHIVFVH YREVTEGRCV LEPNFSVSTE 360 SCPTFNQSNS VTDTQVQGFP SQINELNERC QNSRSPVSVE EVSSEFVTGN TERPHLDKMD 420 RSETYNQPLL PDVSQSLRKL EEQLSLDDDD GGGGGDIYSK EKLQPNCNQN EESECLGLLN 480 YETRDLSQET LDSLFDQLKH ETNGHIEEAG LQDGSSTFQI LKTPECSGWS HSLLNSMSKL 540 NSLGADSGLP TLGKDNNIHG LETVHLAENT VYSSSAFSGI WLEQSQLETP LATDSGLPLA 600 QKPWFSICEI SPEWAFSFES AKKVEVTERF

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MGHALFQYIW ARATWRLVGI WGRRDLFLQA LRRCSESSLL CQEAARVTCT SYQIWLARNA  60
RTFGKHGMSP RLVVESARMQ VAKLSLIIPV EGTLTAQDIW NFHSALAASH TDPSARVVAT  120
GGSQFFDISI LSAELRAIVT LGLQFDTVPP IRARAAASIS ELFLWTDRDA ARGLGSVHKI  180
EARGFDINKL RKEAHTRWLK PIEVLFILQN HESFQLTHKP PVEPPSGSLF LFNRRVLRNF  240
RNDGLLWRKK NNGRTLAESH ERLKVWLGIL KYWLVTMLVG SKIHVFRGAS IGCWTHGRHA  300
HNVEPGKDTC PIWAYVKIYF NIHCFFCFNE RAHEHIVFVH YREVTEGRCV LEPNFSVSTE  360
SCPTFNQSNS VTDTQVQGFP SQINELNERC QNSRSPVSVE EVSSEFVTGN TERPHLDKMD  420
RSETYNQPLL PDVSQSLRKL EEQLSLDDDD GGGGGDIYSK EKLQPNCNQN EESECLGLLN  480
YETRDLSQET LDSLFDQLKH ETNGHIEEAG LQDGSSTFQI LKTPECSGWS HSLLNSMSKL  540
NSLGADSGLP TLGKDNNIHG LETVHLAENT VYSSSAFSGI WLEQSQLETP LATDSGLPLA  600
QKPWFSICEI SPEWAFSFES AKKVEVTERF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026660728.1	0.0	calmodulin-binding transcription activator 4-like isoform X3
TrEMBL	A0A3Q0I1G5	0.0	A0A3Q0I1G5_PHODC; calmodulin-binding transcription activator 4-like isoform X3
STRING	XP_008790758.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6238	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	6e-21	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains