PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1185931g007
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 279aa    MW: 31493.3 Da    PI: 8.9893
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1185931g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed ll+ +++ +G g+W+  +++ g+ R++k+c++rw +yl
  PDK_30s1185931g007 14 KGPWTAREDALLASYIHCHGEGNWRHLPKKAGLLRCGKSCRLRWMNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding48.22.4e-1567112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+  ++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  PDK_30s1185931g007  67 RGNIGPDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                         677789****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.199961IPR017930Myb domain
SuperFamilySSF466891.38E-2811108IPR009057Homeodomain-like
SMARTSM007174.2E-111363IPR001005SANT/Myb domain
PfamPF002495.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-221568IPR009057Homeodomain-like
CDDcd001673.65E-91661No hitNo description
PROSITE profilePS5129424.12262116IPR017930Myb domain
SMARTSM007172.2E-1466114IPR001005SANT/Myb domain
PfamPF002495.3E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2469116IPR009057Homeodomain-like
CDDcd001671.09E-1072112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRAPCCSKV GLHKGPWTAR EDALLASYIH CHGEGNWRHL PKKAGLLRCG KSCRLRWMNY  60
LKPDIKRGNI GPDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKRLREQG  120
IEVREGTSKG TSKRARAAQK KTENTNNKSS SHNGKNRQGT GEITRTKIYV PKPTRLGPTS  180
RNYNLMENSS GSDIPQIENT ATSEEQNGDT SMEDLGIINW SDIDQGGFFF GEDVSNHVPA  240
CDFPSKDRLL ERLYQEYSEL LNPEGDQVQM NAFPQTFPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-23121165108B-MYB
1h8a_C7e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933845.11e-170myb-related protein 308
SwissprotQ9LTC42e-60MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A2H3XY471e-159A0A2H3XY47_PHODC; transcription factor MYB7-like
STRINGXP_008790514.11e-160(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-63myb domain protein 5
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]