PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1183591g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 150aa MW: 17731.1 Da PI: 9.4935 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177 | 5.1e-55 | 11 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi++vd++k+ePwdL+ k ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+ PDK_30s1183591g003 11 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIRDVDLNKLEPWDLKdKcRIGSePQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGR 100 69****************************.9***************943444332445******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl PDK_30s1183591g003 101 DKTIHLSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 140 **************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.15E-55 | 7 | 144 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.391 | 11 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-29 | 12 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MAQPSNRQLT VPPGFRFHPT DEELLYYYLR KKVAYEAIDL DVIRDVDLNK LEPWDLKDKC 60 RIGSEPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKTIHLSNSK RIGMRKTLVF 120 YTGRAPHGQK TDWIMHEYRL DDESMEVQVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-48 | 8 | 144 | 14 | 146 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-48 | 8 | 144 | 14 | 146 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-48 | 8 | 144 | 14 | 146 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-48 | 8 | 144 | 14 | 146 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-48 | 8 | 144 | 17 | 149 | NAC domain-containing protein 19 |
3swm_B | 1e-48 | 8 | 144 | 17 | 149 | NAC domain-containing protein 19 |
3swm_C | 1e-48 | 8 | 144 | 17 | 149 | NAC domain-containing protein 19 |
3swm_D | 1e-48 | 8 | 144 | 17 | 149 | NAC domain-containing protein 19 |
3swp_A | 1e-48 | 8 | 144 | 17 | 149 | NAC domain-containing protein 19 |
3swp_B | 1e-48 | 8 | 144 | 17 | 149 | NAC domain-containing protein 19 |
3swp_C | 1e-48 | 8 | 144 | 17 | 149 | NAC domain-containing protein 19 |
3swp_D | 1e-48 | 8 | 144 | 17 | 149 | NAC domain-containing protein 19 |
4dul_A | 1e-48 | 8 | 144 | 14 | 146 | NAC domain-containing protein 19 |
4dul_B | 1e-48 | 8 | 144 | 14 | 146 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008786536.1 | 1e-105 | protein SOMBRERO-like | ||||
Swissprot | Q5Z6B6 | 2e-92 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A2H3XNU3 | 1e-104 | A0A2H3XNU3_PHODC; protein SOMBRERO-like | ||||
STRING | XP_008786536.1 | 1e-105 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 7e-82 | NAC family protein |
Publications ? help Back to Top | |||
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