PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1182771g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 943aa MW: 106564 Da PI: 8.8172 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.7 | 4.6e-12 | 451 | 493 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l av+ +G ++W +++ + gRt+ qc +rw+k PDK_30s1182771g001 451 DWTEDEDAKLHAAVESFGDNNWQIVSSNLE-GRTGPQCSNRWRK 493 6*****************************.***********98 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 503 | 547 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW+ +Ed++l+ av ++G ++W++Ia+ + gRt qc++rw++ PDK_30s1182771g001 503 GRWSVDEDKRLKVAVMLFGAKNWNKIAQFAP-GRTQVQCRERWLNC 547 8******************************.***********996 PP | |||||||
3 | Myb_DNA-binding | 46.1 | 1.1e-14 | 557 | 599 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd +l+ a++++G W++Ia ++ Rt+ qc+ rw +l PDK_30s1182771g001 557 WTEEEDAKLLAAIAEHGYC-WSKIATFVP-PRTDSQCRRRWKVLL 599 *****************99.*********.9**********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54791 | 7.34E-5 | 165 | 215 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 3.9E-4 | 167 | 214 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50090 | 6.249 | 298 | 388 | IPR017877 | Myb-like domain |
SMART | SM00717 | 9.4E-4 | 302 | 392 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-9 | 305 | 321 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-9 | 362 | 402 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.46E-10 | 372 | 427 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.944 | 391 | 443 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.54 | 395 | 445 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-11 | 403 | 450 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.86E-19 | 428 | 498 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.172 | 444 | 499 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-11 | 448 | 497 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-15 | 451 | 497 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-10 | 451 | 493 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.08E-11 | 452 | 495 | No hit | No description |
SuperFamily | SSF46689 | 3.46E-28 | 499 | 595 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.108 | 500 | 548 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 501 | 550 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 503 | 547 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-18 | 503 | 551 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.42E-12 | 504 | 546 | No hit | No description |
PROSITE profile | PS51294 | 23.834 | 549 | 603 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-18 | 552 | 599 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-14 | 553 | 601 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.29E-13 | 557 | 599 | No hit | No description |
Pfam | PF00249 | 1.3E-13 | 557 | 599 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 943 aa Download sequence Send to blast |
MEALRRACML TGADPAAVND SDSDSGGESS STDDVDLLRR LQERFSVPSS DADSLPFIKP 60 LSSRPLPESD EEDDFETLRA IQRRFTQYDS DAQKKKSENF VQDTEMIVAD VTSERETRNI 120 VPKNSDSGFT EHAENESYSV NFGGFIQSQF PKSAQFFVDA LKKNRSFIED SRAGIKISPQ 180 DHTYVGLNDR LVTLSGSFEE QMRAVYLILL KLIEDAHYPQ TLNSPFSYAG GSKNFSIELA 240 CSSLWMHGTY DNFILVHFNS NTEMLRTKAS YKKVRALYFG PAENSHVSKF KMVLKRFPVS 300 LRKQKWSNME KEKLAKGLKQ QYQEMLILNS MNFESDVDSN LMSGLSSSDL DVTPEKIRSF 360 LPLVNWDRLA SMYVPGRSGE ECEARWLNCE DPMINHNPWT ILEDKKVLFV VQERGIYNWI 420 DISVALGSHR TPFQCLARYQ RSLNPHILNK DWTEDEDAKL HAAVESFGDN NWQIVSSNLE 480 GRTGPQCSNR WRKSLNPDRR KVGRWSVDED KRLKVAVMLF GAKNWNKIAQ FAPGRTQVQC 540 RERWLNCLDP SLNLKGWTEE EDAKLLAAIA EHGYCWSKIA TFVPPRTDSQ CRRRWKVLLP 600 HEVPLLQAAR KMKRTVLISN FVDRESERPA IGPNDFRPVV NFSEAENTDS MGPRKKRPSD 660 NQPKKSRVKS KRSLKENSTA DGVISSTETI LSDSALVRSK NFNTAEGGIK SDNKPKKLRA 720 KSTSVKENAI ADGMANSSAD IVPGDNSLVH IVNYTTAESG RIKRTRKMMP RVKSRGFCKE 780 NIMANGMLAQ ILILLEVGAL KEGAKECQVV INPGSLNLNP GLLKKTKQQL ACSDPQLMPS 840 RKCDARKRKE MFERKLSDNM VNYPDAEQQF TCFKERLTRY FVGWKVLDNI GTGAASEGET 900 NTGQVSQSNT VKEIHCEQDS RPADYGTLLV PTSQGEKKMG MLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-31 | 365 | 603 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-31 | 365 | 603 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 591 | 612 | RRRWKVLLPHEVPLLQAARKMK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017701730.1 | 0.0 | myb-like protein L isoform X1 | ||||
Refseq | XP_017701731.1 | 0.0 | myb-like protein L isoform X1 | ||||
Refseq | XP_017701733.1 | 0.0 | myb-like protein L isoform X1 | ||||
Refseq | XP_017701734.1 | 0.0 | myb-like protein L isoform X1 | ||||
Refseq | XP_026665928.1 | 0.0 | myb-like protein L isoform X1 | ||||
Refseq | XP_026665929.1 | 0.0 | myb-like protein L isoform X1 | ||||
TrEMBL | A0A2H4A006 | 0.0 | A0A2H4A006_PHODC; myb-like protein L isoform X1 | ||||
STRING | XP_008809746.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-156 | myb domain protein 4r1 |