PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1179691g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 24999.9 Da PI: 10.0951 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.9 | 5.8e-32 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q PDK_30s1179691g002 4 SCNGCRVLRKGCSENCSIRPCLqwikkPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQ 94 6****************************************************************************************** PP DUF260 87 leqlkaelallke 99 l+q+++e++l ++ PDK_30s1179691g002 95 LCQAAVEAVLKGA 107 *******998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.059 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-25 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS IRPCLQWIKK PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIM QIPSETAAST 120 PVPPLKAYDI RHVSKDSDDA AATRAAAELH KISKSRTRFK RVAAAKPKHG ATAEGSHVSQ 180 GEPNVAEESE VGLELTLGFE PVSRAGRTTR PAAEARIEMA KTRRLTVLAS F |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008799243.1 | 1e-118 | LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 3e-92 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2H3YIS0 | 1e-116 | A0A2H3YIS0_PHODC; LOB domain-containing protein 41 | ||||
STRING | XP_008799243.1 | 1e-117 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 6e-92 | LOB domain-containing protein 41 |