PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1179501g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | G2-like | ||||||||
Protein Properties | Length: 257aa MW: 29693.6 Da PI: 7.5855 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.2 | 1.6e-32 | 19 | 72 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG++kAtPk +l+lm+v gLt++hvkSHLQ+YR+ PDK_30s1179501g001 19 PRLRWTPDLHHCFVRAIERLGGQDKATPKLVLQLMDVRGLTISHVKSHLQMYRS 72 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-31 | 15 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.569 | 15 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.34E-15 | 17 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-24 | 19 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-8 | 20 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGSCGRNGAV RQYIRSKVPR LRWTPDLHHC FVRAIERLGG QDKATPKLVL QLMDVRGLTI 60 SHVKSHLQMY RSMRNDIGKQ GLQQTQERRH SCEHTDGGAD ELNDDTLLSS LKPQKEFQPQ 120 FMFSPLPMKR NQMETHAISN GETLATQYSF DDYLQTVAAE RGIKENLRWH KDATETGFLA 180 GDQLSKHKAQ WQMEAEPETF EVFKLEDQLL MPNNNRKRKK SKENYEDRCR SYVPPSFCDD 240 HGVKNEEVDD CLLATIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-18 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 215 | 219 | RKRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008812783.1 | 0.0 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A2H3ZF13 | 0.0 | A0A2H3ZF13_PHODC; putative Myb family transcription factor At1g14600 | ||||
STRING | XP_008812783.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2966 | 35 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 8e-33 | G2-like family protein |