PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1174771g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 368aa    MW: 41423.9 Da    PI: 7.4288
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1174771g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.2e-5181361128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         + pGfrFhPtdeelv +yL++kve+k+l + + i+++diyk++PwdLp + + ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+
  PDK_30s1174771g003   8 MLPGFRFHPTDEELVGFYLTRKVEQKPLAI-QLIRQLDIYKYDPWDLPkELAMTGEKEWYFYCPRDRKYRNSPRPNRVTGAGFWKATGTDR 97 
                         579************************999.89***************444556889********************************** PP

                 NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  PDK_30s1174771g003  98 PIYSSdGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 136
                         ****956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-567167IPR003441NAC domain
PROSITE profilePS5100556.5248167IPR003441NAC domain
PfamPF023652.8E-2510136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDQLEEVMLP GFRFHPTDEE LVGFYLTRKV EQKPLAIQLI RQLDIYKYDP WDLPKELAMT  60
GEKEWYFYCP RDRKYRNSPR PNRVTGAGFW KATGTDRPIY SSDGTKCIGL KKSLVFYRGR  120
AAKGIKTDWM MHEFRLPSLF GSSPTNRPFS KNNPANDQWA ICRIFKKTSS LARKALPPSL  180
PPLPKINDAD QFALESTTCM NQSGGNNGSQ LRQQRNITYP PDAGSYESSS NSYKHSLPPI  240
SREEIPASFM FSSVELSAQT KSLLSAASMI HNISDVEKAL SNVDLGRPKN CDGVGADLPF  300
DGEEEISMKV VVADTSIAGN DHLETMHAIG FPLNLLQKLP DEGKTNSQWV SSWCANEMMS  360
YSMNECYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-53217010168NO APICAL MERISTEM PROTEIN
1ut4_B1e-53217010168NO APICAL MERISTEM PROTEIN
1ut7_A1e-53217010168NO APICAL MERISTEM PROTEIN
1ut7_B1e-53217010168NO APICAL MERISTEM PROTEIN
4dul_A1e-53217010168NAC domain-containing protein 19
4dul_B1e-53217010168NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806001.10.0putative NAC domain-containing protein 94
TrEMBLA0A2H3YZG90.0A0A2H3YZG9_PHODC; putative NAC domain-containing protein 94
STRINGXP_008806001.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.19e-92NAC family protein