PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1171331g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 272aa    MW: 30308.5 Da    PI: 5.7216
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1171331g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde+lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
  PDK_30s1171331g002 14 KGPWTPEEDEILVSYIRSYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding53.55.4e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+eE+e +++ +++lG++ W++Ia++++ gRt++++k+ w+++l
  PDK_30s1171331g002  67 RGNFTKEEEETIIKWHEMLGNR-WSAIAAMLP-GRTDNEIKNVWHTHL 112
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.241961IPR017930Myb domain
SuperFamilySSF466894.69E-3110108IPR009057Homeodomain-like
SMARTSM007171.5E-141363IPR001005SANT/Myb domain
PfamPF002493.7E-161461IPR001005SANT/Myb domain
CDDcd001679.96E-121661No hitNo description
PROSITE profilePS5129424.66962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2565116IPR009057Homeodomain-like
SMARTSM007176.8E-1566114IPR001005SANT/Myb domain
PfamPF002498.8E-1667112IPR001005SANT/Myb domain
CDDcd001675.42E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTPE EDEILVSYIR SYGHGNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TKEEEETIIK WHEMLGNRWS AIAAMLPGRT DNEIKNVWHT HLKKRVNPNQ  120
SAQNPKRKAQ SGVKTVMEVG PTKLQAIPLA AHPKLENPSQ DLVSPSQSCS EISSSAATNA  180
STMTGEINDA GIKEGCMQSS EELLKIDASF WSEALSIDDC GMPMDCNMSA GPPPTSLGDP  240
FSSSPSNFDN DDINFWLKVI MEAEDFQELL EI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0093262e-31AP009326.1 Musa balbisiana genomic DNA, BAC clone:MBP_94I16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807658.10.0transcription factor MYB30-like
SwissprotQ7XBH46e-86MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A2H3Z3330.0A0A2H3Z333_PHODC; transcription factor MYB30-like
STRINGXP_008807658.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-75myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]