PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1170901g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 298aa    MW: 33217.8 Da    PI: 9.1927
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1170901g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-112471247
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                        g+WT+eE +l+ da + + g+   +W+ +a++++ g++  +++s++ ++
  PDK_30s1170901g002 24 GNWTQEENKLFEDALAHFDGDtpdRWEMVAAMIP-GKSVQDIISHYKDL 71
                        89********************************.***********875 PP

2Myb_DNA-binding46.11.2e-14130174347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE++l++ + +++G+g+W+ I+r +  +Rt+ q+ s+ qky
  PDK_30s1170901g002 130 PWTEEEHKLFLLGLQKYGKGDWRNISRNFVHTRTPTQVASHAQKY 174
                         8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.92176IPR017884SANT domain
SMARTSM007174.2E-92274IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-42270IPR009057Homeodomain-like
SuperFamilySSF466891.45E-112479IPR009057Homeodomain-like
PfamPF002495.4E-92471IPR001005SANT/Myb domain
CDDcd001677.44E-82571No hitNo description
PROSITE profilePS5129418.563123179IPR017930Myb domain
SuperFamilySSF466896.88E-18125179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-17126177IPR006447Myb domain, plants
SMARTSM007175.9E-13127177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-12127173IPR009057Homeodomain-like
CDDcd001673.48E-11130175No hitNo description
PfamPF002499.2E-13130174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEVLAPTTPY FPNSSWLLGP KRSGNWTQEE NKLFEDALAH FDGDTPDRWE MVAAMIPGKS  60
VQDIISHYKD LEEDVSHIEA GLIPFPGYSS SSFTLDWENS HRYEGSKPSY FVGAKRLGGR  120
PDQERKKGVP WTEEEHKLFL LGLQKYGKGD WRNISRNFVH TRTPTQVASH AQKYFIRLNS  180
GGRDKRRSSI HDITTVSLPN NGPPSPSQSS LLSLQSSSAA NTATSDQFSV IGDSNQPNEA  240
ASVFSPSSHG NQFMQPPHEV TSYGMKLSAQ NSQRGNLRGS TIGAHNMLFR MHPRQSRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1526911176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775057.10.0transcription factor DIVARICATA-like isoform X1
SwissprotQ8S9H75e-99DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2H3WX870.0A0A2H3WX87_PHODC; transcription factor DIVARICATA-like isoform X1
STRINGXP_008775057.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.15e-87Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]