PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1170901g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 33217.8 Da PI: 9.1927 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.4 | 1.2e-11 | 24 | 71 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 g+WT+eE +l+ da + + g+ +W+ +a++++ g++ +++s++ ++ PDK_30s1170901g002 24 GNWTQEENKLFEDALAHFDGDtpdRWEMVAAMIP-GKSVQDIISHYKDL 71 89********************************.***********875 PP | |||||||
2 | Myb_DNA-binding | 46.1 | 1.2e-14 | 130 | 174 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + +++G+g+W+ I+r + +Rt+ q+ s+ qky PDK_30s1170901g002 130 PWTEEEHKLFLLGLQKYGKGDWRNISRNFVHTRTPTQVASHAQKY 174 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.9 | 21 | 76 | IPR017884 | SANT domain |
SMART | SM00717 | 4.2E-9 | 22 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-4 | 22 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.45E-11 | 24 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.4E-9 | 24 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.44E-8 | 25 | 71 | No hit | No description |
PROSITE profile | PS51294 | 18.563 | 123 | 179 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.88E-18 | 125 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-17 | 126 | 177 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.9E-13 | 127 | 177 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-12 | 127 | 173 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.48E-11 | 130 | 175 | No hit | No description |
Pfam | PF00249 | 9.2E-13 | 130 | 174 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MEVLAPTTPY FPNSSWLLGP KRSGNWTQEE NKLFEDALAH FDGDTPDRWE MVAAMIPGKS 60 VQDIISHYKD LEEDVSHIEA GLIPFPGYSS SSFTLDWENS HRYEGSKPSY FVGAKRLGGR 120 PDQERKKGVP WTEEEHKLFL LGLQKYGKGD WRNISRNFVH TRTPTQVASH AQKYFIRLNS 180 GGRDKRRSSI HDITTVSLPN NGPPSPSQSS LLSLQSSSAA NTATSDQFSV IGDSNQPNEA 240 ASVFSPSSHG NQFMQPPHEV TSYGMKLSAQ NSQRGNLRGS TIGAHNMLFR MHPRQSRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-15 | 26 | 91 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008775057.1 | 0.0 | transcription factor DIVARICATA-like isoform X1 | ||||
Swissprot | Q8S9H7 | 5e-99 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2H3WX87 | 0.0 | A0A2H3WX87_PHODC; transcription factor DIVARICATA-like isoform X1 | ||||
STRING | XP_008775057.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 5e-87 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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