PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1170101g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 351aa    MW: 39391 Da    PI: 6.5067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1170101g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.1e-171462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  PDK_30s1170101g002 14 KGPWSPEEDAKLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding41.14e-1369111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +++eEd+++  +    G++ W+ Ia+ m+ gRt++++k++w++
  PDK_30s1170101g002  69 GGFSEEEDQIICSLYISIGSR-WSIIAAQMP-GRTDNDVKNYWNT 111
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.472962IPR017930Myb domain
SuperFamilySSF466897.76E-2712109IPR009057Homeodomain-like
SMARTSM007173.1E-131364IPR001005SANT/Myb domain
PfamPF002498.7E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241569IPR009057Homeodomain-like
CDDcd001671.30E-91662No hitNo description
PROSITE profilePS5129421.82463117IPR017930Myb domain
SMARTSM007173.2E-1167115IPR001005SANT/Myb domain
PfamPF002492.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-2370117IPR009057Homeodomain-like
CDDcd001674.57E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRAPCCDKA HVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPDIRHGG FSEEEDQIIC SLYISIGSRW SIIAAQMPGR TDNDVKNYWN TRLKKKLLGK  120
RRDSWQSRRL SSNHEPNEET NGMSPDASSQ ALSASAPERM QLHKQLQGHC NPFSFYNKPG  180
LWPKFHPLGD ELFFHIQHTD ANTIAATPVQ QASNASMIEP SCQNVFLIKP DIPNPMNAKI  240
QEDLNSSTLG FPSPSSSGAL RMENPSSNFN AAAAGLQDEL HDLLYQKNRC SGGQEQQQQT  300
EFECSKDMNG EKVSMDWWPT DGFEKSSSGS WDSASNPQAD LLQEYELGYD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808341.10.0transcription factor MYB36-like
SwissprotQ9FKL21e-92MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2H3Z4P30.0A0A2H3Z4P3_PHODC; transcription factor MYB36-like
STRINGXP_008808341.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-87myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]