PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1169571g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 282aa    MW: 29384.4 Da    PI: 7.7309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1169571g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-182272256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a++ l+g+
  PDK_30s1169571g001 22 RFIGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDQAARTLRGA 72
                        689******.7*********....4456*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.09E-272179No hitNo description
PfamPF008477.4E-132271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-292279IPR001471AP2/ERF domain
PROSITE profilePS5103220.1922279IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-202279IPR016177DNA-binding domain
SMARTSM003801.1E-342285IPR001471AP2/ERF domain
PRINTSPR003677.9E-82334IPR001471AP2/ERF domain
PRINTSPR003677.9E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVGTVDGGLK ERRKKVSGEQ KRFIGVRQRP SGRWVAEIKD SLQKVRLWLG TFDTAEDAAR  60
AYDQAARTLR GANARTNFDS TSTPSGAGAT GGHDHPLEDM PPFSFEDHSG ESSEGLVGAL  120
QAKLLDGKLA NALGARLSLH AGRKEEAGVP NLGLWPTSST GQEAGVAARP LTGRKARLFL  180
SPSILDGPSS SSSSSSGVFS ASTGSTAAPT GGMSQSFDPC LGPQSSTRGK VEAAASASTD  240
RPDAQAPAGA KGFGSPSTIS FLTLEEDEES ARGPWDHRQL YI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-151678871Ethylene-responsive transcription factor ERF096
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808773.10.0uncharacterized protein LOC103720713
TrEMBLA0A2H3Z5P40.0A0A2H3Z5P4_PHODC; uncharacterized protein LOC103720713
STRINGXP_008808773.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-20related to AP2 11