PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1157381g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 315aa    MW: 34376.3 Da    PI: 10.4857
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1157381g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000175981123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y C++Cgk+F ++  L  H++ H
  PDK_30s1157381g001 59 YLCTNCGKRFYSPQALGGHQNAH 81
                        56******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-65787No hitNo description
PROSITE profilePS5015712.5085986IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-55986IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAPSSPKPSQ ASSPKSPRPS RPSPGSACSV VHHPTNNRRA ERIRSIRETF ARAYTSQAYL  60
CTNCGKRFYS PQALGGHQNA HNREKKLKKE NLLCARPMPK VPFPSNPPSF APNEVCQLNP  120
KPVQYSMERK LASEPRLNFK ETGIVHPYLS DPLKYPNPVA NCTIPLTIQM PSFPFGFDTK  180
GKTALDTFTP PREFSPSFSS SGFEPKGNTA LEAFTPPKKF SSLPDPNIAS RNFIPLWNPS  240
TAARNLAPRF EVSVPFANRN PRLGIVASLP SGGNHGGKAT YYLLGALAAR PAMAAGGVVD  300
REESKPMGLD LDLHL