PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1155011g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 672aa MW: 76990 Da PI: 6.3899

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1155011g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.9	3e-27	25	114	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+r +ekkk +++ +++r+etrtgC a++ ++++ +gk++vt++++ HnH+la PDK_30s1155011g003 25 EFYNTYAENVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFRFREKKKgAKRVKKPRPETRTGCPACMIIRLTPSGKYHVTEFVTYHNHPLA 114 6******************97766.**********9888886788899*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-25	25	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.4E-29	230	325	IPR018289	MULE transposase domain
Pfam	PF04434	1.6E-7	499	545	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.756	499	546	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-7	521	548	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence Send to blast
MEDVNSARWL PRIDMLFDSE NEAYEFYNTY AENVGFFVRR STLWTTSKNI ITRRTFVCSR 60 EGFRFREKKK GAKRVKKPRP ETRTGCPACM IIRLTPSGKY HVTEFVTYHN HPLAVPSSTD 120 LVMSDSVENG QDDESDMADG SADDTVHKQA QSHQSSSLLS LDSKNYLRSK RVKSIQVGDA 180 GATLEYLQKM QDDNPSFFYA VQVDEDDNMT NFFWADAKSM MDFNYFGDAV CFDTTYKIYG 240 YGRPFALFIG VNHHKQVAIF GAALLYDESA ESFKWLFETF KAAMSGRQPK TVLTDRDAAM 300 SEAIAAVWPG TSTSNRFCVW HICQNAVEQL SQAFHGSRTL GYDFSRCLFD FEDEEEFLVA 360 WKAMLEKYDL QDNQWLAKLF DEREKWALVY GRETFYADIK SVQQKENLST GLKKYLSPER 420 ELLSFFEHYE RMLDERRCAE LQADANASLS TKKPPSIRML RQAANAYTPA AFKMFEREFE 480 LYMDCMLYSC GETGTISNYR VTVEEKAKDH FVKFDSLDGT VTCTCKKFEF IGIQCRHVLK 540 VLDTRNIKEL PPQYILKRWR KDAKAGFLSD NGPFSFDSDP QSSLSKRYNY LCRIFSIAAA 600 RAAKSVESYA FIESQSAMLM DQVDQVLQAR PSEMPALITT SCDRSQNPVE SVVTGTTVGL 660 QPWKGCYSGI LK

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence Send to blast

MEDVNSARWL PRIDMLFDSE NEAYEFYNTY AENVGFFVRR STLWTTSKNI ITRRTFVCSR  60
EGFRFREKKK GAKRVKKPRP ETRTGCPACM IIRLTPSGKY HVTEFVTYHN HPLAVPSSTD  120
LVMSDSVENG QDDESDMADG SADDTVHKQA QSHQSSSLLS LDSKNYLRSK RVKSIQVGDA  180
GATLEYLQKM QDDNPSFFYA VQVDEDDNMT NFFWADAKSM MDFNYFGDAV CFDTTYKIYG  240
YGRPFALFIG VNHHKQVAIF GAALLYDESA ESFKWLFETF KAAMSGRQPK TVLTDRDAAM  300
SEAIAAVWPG TSTSNRFCVW HICQNAVEQL SQAFHGSRTL GYDFSRCLFD FEDEEEFLVA  360
WKAMLEKYDL QDNQWLAKLF DEREKWALVY GRETFYADIK SVQQKENLST GLKKYLSPER  420
ELLSFFEHYE RMLDERRCAE LQADANASLS TKKPPSIRML RQAANAYTPA AFKMFEREFE  480
LYMDCMLYSC GETGTISNYR VTVEEKAKDH FVKFDSLDGT VTCTCKKFEF IGIQCRHVLK  540
VLDTRNIKEL PPQYILKRWR KDAKAGFLSD NGPFSFDSDP QSSLSKRYNY LCRIFSIAAA  600
RAAKSVESYA FIESQSAMLM DQVDQVLQAR PSEMPALITT SCDRSQNPVE SVVTGTTVGL  660
QPWKGCYSGI LK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008776588.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2H3X0R1	0.0	A0A2H3X0R1_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRING	XP_008776587.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-121	FAR1-related sequence 5