PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1153381g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 89aa    MW: 9972.97 Da    PI: 5.8456
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1153381g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.9e-11751344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT+ Ed+++ +a + +  +   +W+++a+++g g+++ ++k ++
  PDK_30s1153381g001  7 SWTATEDKKFERALAIYDQDtpdRWEKVAAMVGGGKSAADVKRHY 51
                        7******************9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.07359IPR017884SANT domain
SMARTSM007172.4E-10457IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-6654IPR009057Homeodomain-like
CDDcd001676.68E-9751No hitNo description
PfamPF002491.1E-9751IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-12763IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASSSVSWTA TEDKKFERAL AIYDQDTPDR WEKVAAMVGG GKSAADVKRH YDLLVEDIQS  60
IESGDVPFPN YRTTTNARSA NNRRYPNGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-28187189RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029117421.17e-46protein RADIALIS-like 1
SwissprotF4JVB83e-29RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A2R6PAP81e-31A0A2R6PAP8_ACTCH; Protein RADIALIS-like
STRINGXP_008812249.11e-60(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-31RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]