PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1153301g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 272aa    MW: 28745.7 Da    PI: 9.6046
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1153301g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07101126227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+ C+ +     C++G++C+FaHg+
  PDK_30s1153301g002 101 KTKMCNKYNTAEGCRFGEKCHFAHGE 126
                         899*********************96 PP
2zf-CCCH34.53.5e-11240264126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt+lC +f + G C +G+rC+FaHg
  PDK_30s1153301g002 240 YKTKLCENFTK-GSCTFGERCHFAHG 264
                         9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.83461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.54259No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-1496130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-899129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197100127IPR000571Zinc finger, CCCH-type
SMARTSM003560.37101126IPR000571Zinc finger, CCCH-type
PfamPF146080.068105125No hitNo description
SuperFamilySSF547911.24E-15137218IPR004088K Homology domain, type 1
SMARTSM003223.0E-11145215IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.0E-15145214IPR004088K Homology domain, type 1
PROSITE profilePS5008414.068146210IPR004088K Homology domain, type 1
PfamPF000131.6E-10148212IPR004088K Homology domain, type 1
CDDcd001056.74E-14148210No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-16237270IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7239265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.746239266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-9239269IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8240264IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
METARKRGRP EAVNGGAAGQ KRLKETESFQ SGLGSKSKPC TKFFSTAGCP FGEGCHFLHY  60
VPGGIQAVAQ MTNLGNPAVH PTRNPVLPPA IPDGPPGPVV KTKMCNKYNT AEGCRFGEKC  120
HFAHGERELG RPIPASHDAT ASFGASATAK ISVDASLAGA IIGKGGVNTK QICRITGVRL  180
AIRDHESDPN LRNIELEGSF DQIKHASGMV RELIVNISSN TPMPVKNPVG AAPGGPGNNY  240
KTKLCENFTK GSCTFGERCH FAHGASELRR TA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782861.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-128C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2H3XFA80.0A0A2H3XFA8_PHODC; zinc finger CCCH domain-containing protein 14
STRINGXP_008782861.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-81C3H family protein