PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1153071g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 815aa MW: 93126.9 Da PI: 6.0533

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1153071g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.7	3.5e-22	89	176	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY++Y++ +GF vr+++s++ g +++tf+C k g++ +kk+ ++ rt++ +t+Cka+++++ ++ +++w+v+ +eleHnH+l PDK_30s1153071g001 89 QFYKAYGYFMGFGVRRRTSHNF--LGDRYRSTFTCCKGGSAILKKKN--TKYRTKPAVKTECKAMMVIRDRHlENRWKVEVVELEHNHPLE 175 6**************99998..7777***********9999..9999**********************************97 PP FAR1 91 p 91 p PDK_30s1153071g001 176 P 176 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-19	89	176	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-30	296	389	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
MAAPERATGQ AADPIPNLTP VSSPAPALPE SEPREEQNND ADKDCSAGEQ EGNENECLEE 60 VNKNAPTSAE DALVPRMSMT FDSINEAFQF YKAYGYFMGF GVRRRTSHNF LGDRYRSTFT 120 CCKGGSAILK KKNTKYRTKP AVKTECKAMM VIRDRHLENR WKVEVVELEH NHPLEPDMVR 180 FMKCFRELPA SVKGQLQIND KVAESLNKSI DAAIAPGVGH KNCLSGETDC TSHAEKARKL 240 RLGEGDVEAL LKFFDSMQAR NSNFFYSWDM DDEGQLRNIF WADARSRAEY RYFSDVITFD 300 TRYLTKQYDL PLALFVGVNH HGQSILLGCG LLADETADTY IWLFQKWLRC MSDKPPNAII 360 TDHCKAIGGA VAKVFPHTQH RFCLLHIMRK LPEKIGKMEK RKAISDKLSE AVYDSLTVTD 420 FQREWAEMIE QFQLQDNEWL STLYEDRSQW VPVYVKDTFW ASMSGMQKNE SGSSYFDGYM 480 TSRTSIRMFI EQYENALRSK YEKEAQEDFR SFSTNPNLLS ELEFEKQIAE VYTANIFQEF 540 QVEVKHLMQC ISVIVDRNGP IVTHKVTELA AGKKIDYKVT YNTTEEVVWC ICKSFQFRVL 600 MDIVEIGAIG HDLKEFALMV LKEAREKVMK YEESHGDRRV GDNTVSSTSQ LGGNCHIPAV 660 FDLENDASPM APIARVLDPT QSHPKPRSPM KRLVSQRERA IQNLNPGQGQ EIQPNEAWAM 720 TPIGMQEGFG HMFNNVMLLN LTSRKDMLTK DDPLNYVMLL NLTSRKDMLT KDDPLNYVML 780 LNLTSRKEMM TKDDPVRFSE RASSICYMGD GTQQD

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

MAAPERATGQ AADPIPNLTP VSSPAPALPE SEPREEQNND ADKDCSAGEQ EGNENECLEE  60
VNKNAPTSAE DALVPRMSMT FDSINEAFQF YKAYGYFMGF GVRRRTSHNF LGDRYRSTFT  120
CCKGGSAILK KKNTKYRTKP AVKTECKAMM VIRDRHLENR WKVEVVELEH NHPLEPDMVR  180
FMKCFRELPA SVKGQLQIND KVAESLNKSI DAAIAPGVGH KNCLSGETDC TSHAEKARKL  240
RLGEGDVEAL LKFFDSMQAR NSNFFYSWDM DDEGQLRNIF WADARSRAEY RYFSDVITFD  300
TRYLTKQYDL PLALFVGVNH HGQSILLGCG LLADETADTY IWLFQKWLRC MSDKPPNAII  360
TDHCKAIGGA VAKVFPHTQH RFCLLHIMRK LPEKIGKMEK RKAISDKLSE AVYDSLTVTD  420
FQREWAEMIE QFQLQDNEWL STLYEDRSQW VPVYVKDTFW ASMSGMQKNE SGSSYFDGYM  480
TSRTSIRMFI EQYENALRSK YEKEAQEDFR SFSTNPNLLS ELEFEKQIAE VYTANIFQEF  540
QVEVKHLMQC ISVIVDRNGP IVTHKVTELA AGKKIDYKVT YNTTEEVVWC ICKSFQFRVL  600
MDIVEIGAIG HDLKEFALMV LKEAREKVMK YEESHGDRRV GDNTVSSTSQ LGGNCHIPAV  660
FDLENDASPM APIARVLDPT QSHPKPRSPM KRLVSQRERA IQNLNPGQGQ EIQPNEAWAM  720
TPIGMQEGFG HMFNNVMLLN LTSRKDMLTK DDPLNYVMLL NLTSRKDMLT KDDPLNYVML  780
LNLTSRKEMM TKDDPVRFSE RASSICYMGD GTQQD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010913167.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2H3Z4D9	0.0	A0A2H3Z4D9_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRING	XP_008808221.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-112	FAR1-related sequence 6