PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1150431g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 1560aa MW: 178785 Da PI: 6.9121

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1150431g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.5	1.9e-17	49	132	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++Y++++GF+vr ++++ + + g+ ++ +f+Cs+ gk +++ + r++ +t+C+a + +k++ dg +v+k++leHnH++ PDK_30s1150431g002 49 EFYRQYGRRIGFDVRLKRTTLN-KAGQYYTVEFMCSRGGKGRTDPSY-----LARPTAKTNCQAAILLKLHGDGLLHVKKVNLEHNHPVD 132 6**************99998.6667**********999888.....899******************************975 PP
2	FAR1	39.4	2e-12	736	811	10	91
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 GF v ++ks+ + ++g + + + Cs+ g+ +++ + r++ +t+C+a++++k++ dg ++++ +leHnH+l+p PDK_30s1150431g002 736 QGFGVAVRKSQFT-KSGVCRRLILACSRAGRGRQDACY-----QARQTAKTNCQAMIVLKLWGDGLLHLAEANLEHNHPLSP 811 6999999998887.7888**************9999.....89999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-14	49	132	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.9E-32	250	343	IPR018289	MULE transposase domain
Pfam	PF03101	2.2E-10	736	811	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-33	910	1004	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.951	1197	1233	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-5	1202	1229	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-5	1208	1235	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1560 aa Download sequence Send to blast
MTDTSVVASS SCEEPNSNMQ NGDCKTTGGN DDRTPQVGMT FRSYDEVSEF YRQYGRRIGF 60 DVRLKRTTLN KAGQYYTVEF MCSRGGKGRT DPSYLARPTA KTNCQAAILL KLHGDGLLHV 120 KKVNLEHNHP VDPSMVKLKK YKRKMSSGMG EHHEENEKEV IRRIRRCQTS FHEVGAEGLT 180 SGEDCEAFNR RRHLMLQVGD ADALYKFFMH MQTQNPNSFY SIDFDGEGRL RNLLWVDAMS 240 RAAYKYFGDV LLFDTTYLTN DYDLPLVLFL GVNNHSQLVL LGCGLLSDET AETYFWLFKT 300 WLACMSSRPP NALITDQCEA IKNAAAKVFP GARHRLCLWQ VMKRISETLK GNERCKEIKK 360 SLEKVIYNSY RANDFEEDWM KTSEKYGLKD NDCLNWLYEN RHSWVPLYLK DTFWAGMSMT 420 RRGPSMCAFF DGFIYSGTSL KQFLSLYETA LQSKYEKEAQ ADYESFNKGR NLVSKFYMEE 480 QLFELYTHNM FKEFQEELKT TIYCNVSLVK EDGPVSTFEI NESIFLEDGS VAEYKALEVI 540 YNSEEQEIQC LCGSFQFRGM TSDDRYRLAL NSTGELEKFL LNNSTSANMQ VKIVPCETKT 600 NENAENLAAS QLGTIEGDKV LNSLQGKRRG RPPKKRKESD IDASSLSDKK TNDLRTLCIE 660 SQSERLLVAS PTLHPGSIIG AQESLMLMGE GQFAQTVENQ SRMQWIYPHM LQVSAIEKVK 720 TGAQGRHIKV ILEGNQGFGV AVRKSQFTKS GVCRRLILAC SRAGRGRQDA CYQARQTAKT 780 NCQAMIVLKL WGDGLLHLAE ANLEHNHPLS PSTARFLSCY KKMTDAMVEG PIAQPNGHQN 840 IQSENRNSNE IGRLKLAEGD DESICHFFAG MQNKNPNFFY LMDLDKHGYL RNLFWSDARS 900 RAAYQYFGDV VSFDTTYLTE KYDLPLVLFI GMNHHGQSVL LGCGLVSDET IETYIWLFKA 960 FLTCMLGCCP NAIITDHCMA IQGAVAEVFP GVRHRFCMFH IMKKMPEELK GFADFKAVKK 1020 AVKKAAYDSL RVNEFEEEWK KIIEGHELEG NEWLDSLYEN RNMWVPAYLK DAFWAGMSIS 1080 QRGETVPAFF DGCLYPRTSL KQFLSKYEMI LQSKYKKEAQ ADSESFHKTP LTISKFYMEE 1140 QLSKLYTVSM FRKFQDELKA TMYCDVSPIK VDGSLIMFEV RECSYMEDGK RTEKKDHEVL 1200 YDADKFQVQC ICGSFQFRGI LCRHALSVFK LQQVFEIPSH YILDRWKKDY KRLHALAHPS 1260 HDMLADTIME RYDYLSMRCL HLAELGFVSD DRYQVALKLI REVEKSLMER YDYLSMRCLH 1320 LAELGFVSDD RYQVTLKLIR EVEKSLFDNG SCRDRQPMLL SLESQSNENV QNLLVPRLGI 1380 SEGNKNSNSS HVKRRGRPPK KGREPQVELL VRSSKEQDFL RSSLVGNENN VLQSAPLASH 1440 LDAHIGTQGG IDLMEEVTPD DLSFGSHFSI HVNHQHHMGN HTRLQSSNLL QGRSDCKCTF 1500 WPKDWVEDED VGYEMQTQLI GNEVGWTDPN PKMEGKSAST MIQDINLVES EITEKLSRLQ

Sequence ? help Back to Top

Protein Sequence Length: 1560 aa Download sequence Send to blast

MTDTSVVASS SCEEPNSNMQ NGDCKTTGGN DDRTPQVGMT FRSYDEVSEF YRQYGRRIGF  60
DVRLKRTTLN KAGQYYTVEF MCSRGGKGRT DPSYLARPTA KTNCQAAILL KLHGDGLLHV  120
KKVNLEHNHP VDPSMVKLKK YKRKMSSGMG EHHEENEKEV IRRIRRCQTS FHEVGAEGLT  180
SGEDCEAFNR RRHLMLQVGD ADALYKFFMH MQTQNPNSFY SIDFDGEGRL RNLLWVDAMS  240
RAAYKYFGDV LLFDTTYLTN DYDLPLVLFL GVNNHSQLVL LGCGLLSDET AETYFWLFKT  300
WLACMSSRPP NALITDQCEA IKNAAAKVFP GARHRLCLWQ VMKRISETLK GNERCKEIKK  360
SLEKVIYNSY RANDFEEDWM KTSEKYGLKD NDCLNWLYEN RHSWVPLYLK DTFWAGMSMT  420
RRGPSMCAFF DGFIYSGTSL KQFLSLYETA LQSKYEKEAQ ADYESFNKGR NLVSKFYMEE  480
QLFELYTHNM FKEFQEELKT TIYCNVSLVK EDGPVSTFEI NESIFLEDGS VAEYKALEVI  540
YNSEEQEIQC LCGSFQFRGM TSDDRYRLAL NSTGELEKFL LNNSTSANMQ VKIVPCETKT  600
NENAENLAAS QLGTIEGDKV LNSLQGKRRG RPPKKRKESD IDASSLSDKK TNDLRTLCIE  660
SQSERLLVAS PTLHPGSIIG AQESLMLMGE GQFAQTVENQ SRMQWIYPHM LQVSAIEKVK  720
TGAQGRHIKV ILEGNQGFGV AVRKSQFTKS GVCRRLILAC SRAGRGRQDA CYQARQTAKT  780
NCQAMIVLKL WGDGLLHLAE ANLEHNHPLS PSTARFLSCY KKMTDAMVEG PIAQPNGHQN  840
IQSENRNSNE IGRLKLAEGD DESICHFFAG MQNKNPNFFY LMDLDKHGYL RNLFWSDARS  900
RAAYQYFGDV VSFDTTYLTE KYDLPLVLFI GMNHHGQSVL LGCGLVSDET IETYIWLFKA  960
FLTCMLGCCP NAIITDHCMA IQGAVAEVFP GVRHRFCMFH IMKKMPEELK GFADFKAVKK  1020
AVKKAAYDSL RVNEFEEEWK KIIEGHELEG NEWLDSLYEN RNMWVPAYLK DAFWAGMSIS  1080
QRGETVPAFF DGCLYPRTSL KQFLSKYEMI LQSKYKKEAQ ADSESFHKTP LTISKFYMEE  1140
QLSKLYTVSM FRKFQDELKA TMYCDVSPIK VDGSLIMFEV RECSYMEDGK RTEKKDHEVL  1200
YDADKFQVQC ICGSFQFRGI LCRHALSVFK LQQVFEIPSH YILDRWKKDY KRLHALAHPS  1260
HDMLADTIME RYDYLSMRCL HLAELGFVSD DRYQVALKLI REVEKSLMER YDYLSMRCLH  1320
LAELGFVSDD RYQVTLKLIR EVEKSLFDNG SCRDRQPMLL SLESQSNENV QNLLVPRLGI  1380
SEGNKNSNSS HVKRRGRPPK KGREPQVELL VRSSKEQDFL RSSLVGNENN VLQSAPLASH  1440
LDAHIGTQGG IDLMEEVTPD DLSFGSHFSI HVNHQHHMGN HTRLQSSNLL QGRSDCKCTF  1500
WPKDWVEDED VGYEMQTQLI GNEVGWTDPN PKMEGKSAST MIQDINLVES EITEKLSRLQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008800847.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2H3YM68	0.0	A0A2H3YM68_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRING	XP_008800847.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-125	FAR1-related sequence 6