PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s1148891g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 154aa MW: 17179.8 Da PI: 5.541 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 2e-07 | 1 | 24 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W+ a +++ gRt++++k++w+++l PDK_30s1148891g001 1 WSMMATRLP-GRTDNEIKNYWNTHL 24 999******.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 3.83E-6 | 1 | 24 | No hit | No description |
SuperFamily | SSF46689 | 1.14E-6 | 1 | 31 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.667 | 1 | 28 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-12 | 1 | 25 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 154 aa Download sequence Send to blast |
WSMMATRLPG RTDNEIKNYW NTHLRKKLLL MGIDPVTHRP KADLDLLAML PPLLAAAQNL 60 GNLTAPLDNV LRLQADAANL ARFQILQSLI QLTSITSPLD ADARNLLGSA SLQNYHQFSD 120 LLQMNHQLEG VMDGSLGLPQ NQIPFELQED SLLF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_026662258.1 | 4e-97 | transcription factor MYB53-like | ||||
Swissprot | Q9S9Z2 | 7e-23 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A2H3ZST4 | 1e-95 | A0A2H3ZST4_PHODC; transcription factor MYB53-like | ||||
STRING | XP_008796312.1 | 3e-97 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16770.2 | 7e-23 | myb domain protein 9 |
Publications ? help Back to Top | |||
---|---|---|---|
|