PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1148281g022
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARR-B
Protein Properties Length: 734aa    MW: 79271.3 Da    PI: 6.4508
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1148281g022genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.21.6e-27222275155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv+av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQk+Rl
  PDK_30s1148281g022 222 KPRVVWSVELHQQFVNAVNQL-GIDKAVPKRILDLMNVPNLTRENVASHLQKFRL 275
                         79*******************.********************************8 PP
2Response_reg74.83.3e-25391471109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+ + +++l+++l + +y +v++++ ++ al +l+e +  +D+++ D+ mp+mdG++ll+ i  e  +lp+i+++a    + + + 
  PDK_30s1148281g022  39 VLVVDDDTICLRILERMLLECRY-NVTTCTMATRALSILRETKggFDVVISDVHMPDMDGFQLLELIGLEM-DLPVIMMSADMRTSIVMQG 127
                         89*********************.***************999999**********************6644.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +k Ga d+l Kp+ +eel +
  PDK_30s1148281g022 128 IKHGACDYLIKPVRMEELKN 147
                         *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-4136172No hitNo description
SuperFamilySSF521721.2E-3536165IPR011006CheY-like superfamily
SMARTSM004481.2E-2637149IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.62838153IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-2239147IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.15E-2640152No hitNo description
PROSITE profilePS5129410.756219278IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-29219280IPR009057Homeodomain-like
SuperFamilySSF466892.87E-19220279IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-24222275IPR006447Myb domain, plants
PfamPF002491.6E-6224273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MAKVQQMPPS SMGTGSFYDG SSSKVREPIP KDFPVGMRVL VVDDDTICLR ILERMLLECR  60
YNVTTCTMAT RALSILRETK GGFDVVISDV HMPDMDGFQL LELIGLEMDL PVIMMSADMR  120
TSIVMQGIKH GACDYLIKPV RMEELKNIWQ HVVRKKWQDN REAEHSDSFE DSDRNRRVTG  180
DAENNSSGID ATDNASKSQK KRRDGREDDE GELDNSDSSS KKPRVVWSVE LHQQFVNAVN  240
QLGIDKAVPK RILDLMNVPN LTRENVASHL QKFRLYLKRL SIAQHHTGLP NSLSGVGSNA  300
KVPFLGSLDF QGLTVAGQIP PQTLAAWQDE LLGRPSGSLG MSAMDQPLLQ QASMQGAKSV  360
PIEHGIAFGL PLMKCPANMP RQFPQSNAVR GLSSGFPTSS SSKVISASNL GGLSNTQNSN  420
LQVPVLQQQQ LHPVLSESHR AINVQPSCLV LPSQASKSFQ ERENPVLANQ NSVVVPSRLS  480
TSFQSGNNPN PMNIIVPPQS STSMQADNNL GLINQNSSLT NFQGGNNPGL INQNSMVVPS  540
QPLTSFQAGS NPSPISHSSS YKKGSRIVDY NLLSSNSSNV QVGEAQVSDE VFKNVAVLNS  600
CSIPKSISSS VPSCTDVGWW AQTLHGNIGP VNQSCLMPNL SNIQGAGAVS QILPDQGQGK  660
NLDLPNFSNI DCGGTVSQTL PGQGQGRSLG FIGEGARIPS WFAVDDIQSP TTGSRLNDDG  720
DILNQGLLGS NGDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-23218281164ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926099.10.0two-component response regulator ORR21
TrEMBLA0A2H3WYF00.0A0A2H3WYF0_PHODC; LOW QUALITY PROTEIN: two-component response regulator ORR21
STRINGXP_008775607.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-114response regulator 2